Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k19
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 117 9e-27
02_05_0759 + 31545473-31546204 73 3e-13
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 30 2.4
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 30 2.4
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 3.1
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 29 5.5
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778... 29 5.5
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 9.6
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 117 bits (282), Expect = 9e-27
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 2/192 (1%)
Frame = +2
Query: 128 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 301
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 302 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 481
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 482 AAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDK 661
AH+GEV V T PL + + + L+ L+ L N+T+ + K+D S++GG+V+ G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202
Query: 662 YVDMSVASKVKK 697
DMS+ ++ K+
Sbjct: 203 VFDMSIKTRAKQ 214
>02_05_0759 + 31545473-31546204
Length = 243
Score = 72.5 bits (170), Expect = 3e-13
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Frame = +2
Query: 203 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 382
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 383 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEA 562
L N L ++ +NGR G + ++ F+ A EV T + Q + Q+L
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179
Query: 563 ALKKF--LKGNETVQLTAKVDPSLIGGMVVSI---GDKYVDMSVASKVKKYT 703
++ L G + V++ ++DP LI G + G +DMSV ++++ T
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEIT 231
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 29.9 bits (64), Expect = 2.4
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +2
Query: 191 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 364
LE Y S A K KAL+ + E C+ ++ AK + F+ R V AL
Sbjct: 56 LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115
Query: 365 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 532
V K + L G+L NG + K+ N + A+ A E A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170
Query: 533 DQAQRQNLE 559
D R L+
Sbjct: 171 DVKPRPVLK 179
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 512 VVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIG---DKYVDMSVA 682
V +A LD Q + + +++ + G ++ + VDPSLI G VV G +D+SV
Sbjct: 449 VSSAVELDARQTELIARKMRR-ITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVK 507
Query: 683 SKV 691
K+
Sbjct: 508 GKL 510
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 530 LDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKKYTEL 709
L+ Q + + + K L G+ + ++ P L G +++IG Y D+ KV KY+ +
Sbjct: 659 LNSKQPKQEKDDIAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLI 717
Query: 710 ISAA 721
A
Sbjct: 718 FFTA 721
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 486 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 391
AA+ +L+ A++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>03_02_0358 +
7784067-7784128,7784239-7785040,7785513-7785617,
7785835-7786194
Length = 442
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +2
Query: 488 HRGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 640
H G VA V T P+D A R + +E+ L+ L+G T DPS G +
Sbjct: 155 HGGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 269 RVLFPRCQAPWSLMLLKKERKHTDLPIQILALEVLPFVLMRHLCSKSEPADSPLKP 102
RV P + S ++ RK + L + L ++ F+ +C P DSP+ P
Sbjct: 317 RVQTPEPEPTASSERARRPRKRSSLRFLVAPLALVVFMAAALICVPPPPVDSPVMP 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,316,189
Number of Sequences: 37544
Number of extensions: 425140
Number of successful extensions: 1075
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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