Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k19
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 196 2e-50
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 194 8e-50
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 4.9
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 4.9
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 4.9
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 4.9
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 4.9
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 4.9
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 4.9
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 29 4.9
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 6.5
U80437-16|AAN84841.1| 183|Caenorhabditis elegans Mus (drosophil... 28 8.6
U80437-15|AAB37627.1| 445|Caenorhabditis elegans Mus (drosophil... 28 8.6
U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical pr... 28 8.6
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 28 8.6
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 196 bits (477), Expect = 2e-50
Identities = 94/217 (43%), Positives = 148/217 (68%), Gaps = 2/217 (0%)
Frame = +2
Query: 80 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 253
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 254 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 433
+ +L + K + K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 434 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 613
RL KLE+V+++F+ +M AHRGE+ +V +A+ L + ++ L AL K K + + +T
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191
Query: 614 VDPSLIGGMVVSIGDKYVDMSVASKVKKYTELISAAV 724
V PS++GG+VV+IGDKYVD+S+AS+VKKY + ++ A+
Sbjct: 192 VKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 228
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 194 bits (472), Expect = 8e-50
Identities = 93/204 (45%), Positives = 143/204 (70%), Gaps = 2/204 (0%)
Frame = +2
Query: 119 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 292
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 293 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 472
+ K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 473 IMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSI 652
+M AHRGE+ +V +A+ L + ++ L AL K K + + +T V PS++GG+VV+I
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTI 183
Query: 653 GDKYVDMSVASKVKKYTELISAAV 724
GDKYVD+S+AS+VKKY + ++ A+
Sbjct: 184 GDKYVDLSIASRVKKYKDALATAI 207
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +2
Query: 548 QNLEAALKKFL-KGNETVQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVASKVKKYTELI 712
QNL L++ + KG ET++ + + + I G V++ GD +VD+ ++ KV++ +++
Sbjct: 323 QNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEEEKKMV 382
Query: 713 SAAV 724
+ V
Sbjct: 383 NEFV 386
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +2
Query: 548 QNLEAALKKFL-KGNETVQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVASKVKKYTELI 712
QNL L++ + KG ET++ + + + I G V++ GD +VD+ ++ KV++ +++
Sbjct: 323 QNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEEEKKMV 382
Query: 713 SAAV 724
+ V
Sbjct: 383 NEFV 386
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 397
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293
Query: 398 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 502
+G + + + + + + K+ +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 253 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*DQSFSYNW 402
R RTL V+++++ + I PD + KHEG CV+ + + +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 212 ALFSAASKTKALDIVEKELCQFQQSIK 292
+LF+AA+KT + D+VE LC + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160
>U80437-16|AAN84841.1| 183|Caenorhabditis elegans Mus (drosophila
mutagen sensitive)related protein 81, isoform b protein.
Length = 183
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 425 ENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQA----QRQNLEAALKKFLKGNE 592
+ GRL + + N ++ A H+G+VACE A L QR + FLK
Sbjct: 25 QKGRLN-MAPMKNRVYLIEAQHKGDVACEQAVASTLSNGGYLIQRCSDTRDTAAFLK-EV 82
Query: 593 TVQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKK 697
T++L K I G+ S + A VK+
Sbjct: 83 TIRLQNKAAIEEISGVPFSQLQNLLQKKKAETVKE 117
>U80437-15|AAB37627.1| 445|Caenorhabditis elegans Mus (drosophila
mutagen sensitive)related protein 81, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 425 ENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQA----QRQNLEAALKKFLKGNE 592
+ GRL + + N ++ A H+G+VACE A L QR + FLK
Sbjct: 287 QKGRLN-MAPMKNRVYLIEAQHKGDVACEQAVASTLSNGGYLIQRCSDTRDTAAFLK-EV 344
Query: 593 TVQLTAKVDPSLIGGMVVSIGDKYVDMSVASKVKK 697
T++L K I G+ S + A VK+
Sbjct: 345 TIRLQNKAAIEEISGVPFSQLQNLLQKKKAETVKE 379
>U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical
protein F38B6.2 protein.
Length = 218
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 276 NWQSSFSTMSSAL--VFDAAEKRAEAYRPSNPNTCTGGFTICADA 148
+WQS T ++ D A +P+NP TCTG CA A
Sbjct: 33 SWQSPDLTYVPSINQCSDYTTGNGVACKPNNPFTCTGRNPFCATA 77
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 548 QNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVS 649
QNL ++KK L G T + T +DP+ + ++ S
Sbjct: 579 QNLYFSVKKSLDGKRTRRATGSIDPTKLPNLLAS 612
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,268
Number of Sequences: 27780
Number of extensions: 387493
Number of successful extensions: 1210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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