Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22k19
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 405 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 301
           LP V + + LL + FN   FM+   V L +  L+F
Sbjct: 315 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNF 349


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 405 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 301
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 405 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 301
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 405 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 301
           LP V + + LL + FN   FM+   V L +  L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 62  LLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYA 208
           +L C  +FL + +      LLV    + +  A +V P   ++ + G ++
Sbjct: 60  ILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWS 108


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 272 QFQQSIKTDAKLKEFIINPTIKRS 343
           +F+ SIK   KLK+  I  T K S
Sbjct: 661 EFRSSIKASDKLKDSRIKTTEKLS 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,333
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)