Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k01
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 121 1e-28
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.049
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.049
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.065
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.065
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.086
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.11
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.61
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.80
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.4
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.4
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 4.3
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 7.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.9
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 121 bits (292), Expect = 1e-28
Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 17/245 (6%)
Frame = +2
Query: 137 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 301
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 302 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 466
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 467 SSNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNKYIPP---S 625
+ + +CR C+G+H T CP+K +YI P +
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRA 183
Query: 626 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 805
+GR G R+D +R++NLS+ E ++ DL + FG + ++YLAK+K TG K
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 806 GFAYV 820
GFA+V
Sbjct: 244 GFAFV 248
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 659 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
P + + I ++ + A E ++DL FGPV L+L ++ TG+ KG+A +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.049
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D + +S L+N ++ D + GPV + ++K +G KG AYV
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.1 bits (72), Expect = 0.049
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ NL+ E D+ L FG + ++++ +K T + KGFAY+
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYI 369
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.7 bits (71), Expect = 0.065
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 671 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
E + + NLS A E D+ G G + + L + +G KGF YV
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.065
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+S LS E+DI+ +GP+ ++ + + K TG G+A+V
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFV 146
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.086
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 665 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
++E + + + NL +AD+ + G + ++ L + TG CKGF +V
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ ++ G V+++ + +K TGH KGFAY+
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 173 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 307
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.80
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +2
Query: 179 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 343
P E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 344 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 466
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 611 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA 778
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 779 KEKSTGHCKGFAY 817
K + G KGF +
Sbjct: 343 KNIADGSSKGFCF 355
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +2
Query: 239 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 418
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 419 ESQRPDDGELDGLKPPSSNVI 481
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +2
Query: 146 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 322
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 323 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 442
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 683 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 823
++ + L EA + +L GPV + + ++ T G+AYV+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 146 EVEIDQGVLPPPSEVVENGLKIVTEYKY 229
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 686 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 817
+ + N+ E + D+ K GPV L + +G KG+ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 179 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 358
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 359 NPATTN 376
PA+T+
Sbjct: 104 APASTS 109
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 674 DVTAIRISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D + + + NL + + ++ ++DL FG + LA ++G KG+ +V
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 195 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 103
STTS +TP + S+SS+ + +SS++ S
Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,406
Number of Sequences: 5004
Number of extensions: 59365
Number of successful extensions: 193
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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