Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k01
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 120 1e-27
02_05_1014 + 33510108-33510471,33510857-33511362 83 3e-16
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178... 39 0.004
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 39 0.004
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 37 0.017
05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644 37 0.017
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 36 0.052
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309... 35 0.090
08_02_1064 - 24033941-24034127,24034432-24034476,24035355-240354... 35 0.090
04_04_0176 - 23329589-23331043 33 0.21
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 33 0.21
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856... 33 0.28
12_02_0846 - 23623624-23623784,23624076-23624258,23624601-236246... 33 0.36
04_04_1487 - 33919654-33920399,33920676-33920817 32 0.64
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 31 1.5
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276 30 1.9
08_02_1084 - 24232968-24234779 30 2.6
07_01_0182 + 1280479-1280754,1281232-1282089 30 2.6
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 2.6
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 29 3.4
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 29 4.5
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 29 4.5
12_01_0964 + 9685989-9686459 29 5.9
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 29 5.9
11_06_0326 - 22382001-22383248 28 7.8
04_04_1575 + 34548774-34549109,34549979-34550185 28 7.8
04_03_0872 + 20452534-20453271 28 7.8
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 120 bits (290), Expect = 1e-27
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 16/245 (6%)
Frame = +2
Query: 137 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 289
W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 290 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 469
SKS +R++W KFGD+ + G + E V + +++ P D L S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEPSASG-DPLASKS 130
Query: 470 SNVIFKCRTC--QGDHLTLYCPFK----HTQIXXXXXXXXXXXXXXXXXXSNKYIPPSS- 628
V+ CRTC +GDH T CP+K T+ Y+PPS
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYKDLAPQTEAFVDRPPTADGSGPPGGAVKGAYVPPSMR 190
Query: 629 AGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG 808
+G + RR D ++R++NLS E D+ +L + FGPV ++Y+A ++ TG +G
Sbjct: 191 SGAVDRVGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGPVSRVYVAVDQKTGASRG 250
Query: 809 FAYVH 823
F +V+
Sbjct: 251 FGFVN 255
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 82.6 bits (195), Expect = 3e-16
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Frame = +2
Query: 176 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 337
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A+R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 338 ASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 517
A + T E++ ++ + +D + L ++ ++ + +G H T
Sbjct: 96 AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153
Query: 518 LYCP---FKHTQIXXXXXXXXXXXXXXXXXXSN---KYIPPSSAGRIPGRDQPPVRREDV 679
CP F Q+ + KY+PP R+ RR D
Sbjct: 154 SKCPNKDFAPLQLDALVDNNIPPNSGGDNGGGSRPGKYVPPKP------RESEMRRRNDE 207
Query: 680 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
++R++NLS E D+ +L FGP+ + Y+A + TG +GF ++
Sbjct: 208 NSVRVTNLSEDTREEDLRELFGSFGPLTRAYVALDHRTGESRGFGFL 254
>11_06_0728 +
26717018-26717306,26717494-26717598,26717789-26717870,
26717979-26718055,26719087-26719151,26719261-26719302,
26719385-26719444,26719583-26720203,26720315-26720450,
26720667-26720734,26720811-26720948
Length = 560
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 614 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 793
+ P SAG + G D+ I + L + EA + +L++ FGP+ L K++ T
Sbjct: 334 LTPGSAGGLEGPDR----------IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRET 383
Query: 794 GHCKGFAY 817
G+ KG+A+
Sbjct: 384 GNSKGYAF 391
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 614 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 793
+ P SAG + G D+ I + L + EA + +L++ FGP+ L K++ T
Sbjct: 339 LTPGSAGGLEGPDR----------IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRET 388
Query: 794 GHCKGFAY 817
G+ KG+A+
Sbjct: 389 GNSKGYAF 396
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+SNL D+ + FGPV +YL K+ +TG +GFA+V
Sbjct: 401 VSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFV 443
>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
Length = 254
Score = 37.1 bits (82), Expect = 0.017
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +2
Query: 458 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQIXXXXXXXXXXXXXXXXXXSNKYIPPSSAGR 637
+ P + C +G+HL L CP+ + + +Y S R
Sbjct: 93 RDPDTEFCNICGDDKGNHLELMCPYNYLSPAAYFPCRARLALWGNYTTTLRY--KCSRHR 150
Query: 638 IPGRDQPPVRREDVTA--------IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 793
+ +PP+ E +R++NLS + +L FGP+ Y+ S
Sbjct: 151 EEEQSEPPMHDEANARRLGFLRCLVRVNNLSELCPPEQLVELFGRFGPLWMWYVPTRGSG 210
Query: 794 GHCKGFAYV 820
G CKGF V
Sbjct: 211 GTCKGFGCV 219
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 35.5 bits (78), Expect = 0.052
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 823
I L E D+ +L FG ++++ L K+K T KGFA+V+
Sbjct: 108 IGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVN 151
>10_01_0298 -
3094197-3094307,3095093-3095253,3095462-3095666,
3096349-3096534,3096616-3096756,3096843-3096959,
3097046-3097456
Length = 443
Score = 34.7 bits (76), Expect = 0.090
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
I L E D+ +L + FG + ++ L K+K T KGFA+V
Sbjct: 113 IGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFV 155
>08_02_1064 -
24033941-24034127,24034432-24034476,24035355-24035421,
24035521-24035600,24035691-24035769,24035864-24035939
Length = 177
Score = 34.7 bits (76), Expect = 0.090
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 644 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
GR PP R D ++ + N+S D+ L +G V +++ +++ TG +GFA+V
Sbjct: 5 GRSGPPDIR-DTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFV 62
>04_04_0176 - 23329589-23331043
Length = 484
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 656 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGF 811
PP TA+ I L + +A+++ + G +H L+ +K TG +GF
Sbjct: 116 PPRASPPTTAVFIGELPYWTTDAEVEGALAPHGALHGLHFFTDKLTGKSRGF 167
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 632 GRIPGRDQPPVRREDVT-AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG 808
GR P R R+E + ++ + N+ D+ + FGPV +YL K+ TG +G
Sbjct: 20 GRSPPRRGYGGRKEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRG 79
Query: 809 FAYV 820
FA+V
Sbjct: 80 FAFV 83
>03_03_0117 -
14583102-14583186,14585202-14585336,14585440-14585604,
14586168-14586245,14586796-14586941
Length = 202
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 620 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 799
PS GR GRD R+ T++ + NL D+ FG V +YL ++ TG
Sbjct: 22 PSPRGRYGGRD-----RDLPTSLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPRDYYTGE 76
Query: 800 CKGFAYV 820
+GF ++
Sbjct: 77 PRGFGFI 83
>12_02_0846 -
23623624-23623784,23624076-23624258,23624601-23624641,
23624746-23624910,23625808-23625885,23626024-23626169
Length = 257
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 632 GRIPGRDQPPVRREDVT-AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKG 808
GR P R RRE + ++ + N+ D+ + FGPV +YL K+ +G +G
Sbjct: 20 GRSPPRRGYGGRREQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRG 79
Query: 809 FAYV 820
FA+V
Sbjct: 80 FAFV 83
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 642 LVVISPLCVVKT*LPSVYQTLAILQLKLILMTLSKVLALCINC 770
L+++ L +++ LP + L +L L L+L+ LS L LC+NC
Sbjct: 3 LLLLLLLLLLQLLLPPLLLPLLLLLLLLLLLLLSLSLVLCLNC 45
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 680 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
T + + N+S A DI + FGPV +YL + T +GF +V
Sbjct: 61 TGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFV 107
>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
Length = 924
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 653 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
Q P + D+ + + NLS + L FG V +AK+ +TG KG+ +V
Sbjct: 295 QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFV 350
>08_02_1084 - 24232968-24234779
Length = 603
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 680 TAIRISNLSNFAVEADID-DLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
T + + L + +AD++ +L+K +GPV ++ EK++G KG+ V
Sbjct: 183 TTLFVGELHWWTTDADLEAELIK-YGPVKEVRFFDEKASGKSKGYCQV 229
>07_01_0182 + 1280479-1280754,1281232-1282089
Length = 377
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ + A EA++ +G V + + ++K TGH +GF +V
Sbjct: 24 VGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHGRGFGFV 66
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 104 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 280
D + E +A+WA Q VL P + LK D +V + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754
Query: 281 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 367
R + KS K T + F +S P NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 749 FGPVHKLYLAKEKSTGHCKGFAYV 820
FGP+ + KE+S+G +GF YV
Sbjct: 26 FGPLDDCVVMKERSSGRSRGFGYV 49
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 614 IPPSSAGRIPGRDQPPVRREDVTAIR-ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKS 790
+P R+ R P R V +R NLS F + AD GFGP+ +L + K
Sbjct: 912 VPNRCPNRVEARALQPSR---VFILRHCPNLSTFTITADNSSSSHGFGPLLQLEITDCKK 968
Query: 791 TGHCKG-FAYV 820
+G FA+V
Sbjct: 969 LKSIQGAFAFV 979
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 626 SAGRIPGRDQPPVR--REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 799
++G P R+Q R R + + + NLS A + +L G G V + + ++ +G
Sbjct: 160 NSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGR 219
Query: 800 CKGFAYV 820
+GF +V
Sbjct: 220 SRGFGFV 226
>12_01_0964 + 9685989-9686459
Length = 156
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 176 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 39
VE+ QS Q R +++QQQ C+ + I Q C S +VI+ +
Sbjct: 58 VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 680 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ + +SNL AD++ + GPV + ++ K + +GF +V
Sbjct: 27 STVFVSNLPYTFKSADLEAVFSEVGPVRRCFMVAPKGSETSRGFGFV 73
>11_06_0326 - 22382001-22383248
Length = 415
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 749 FGPVHKLYLAKEKSTGHCKGFAYV 820
FGP+ + + ++TG CKGF +V
Sbjct: 111 FGPLAECDVVARRATGACKGFGFV 134
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 104 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 274
D+PV +F A W + V+ +E E LKIV K D+D +++ YK+
Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137
>04_03_0872 + 20452534-20453271
Length = 245
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 418 FLTGDELHEDIFSYISSSRVRP 353
F+ GDELHED F + SS P
Sbjct: 31 FVAGDELHEDDFLFSSSPAAPP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,653,988
Number of Sequences: 37544
Number of extensions: 386585
Number of successful extensions: 1220
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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