Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k01
(825 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118933-1|AAM50793.1| 269|Drosophila melanogaster LD24347p pro... 238 8e-63
AE014298-421|AAF45796.1| 269|Drosophila melanogaster CG8636-PA ... 238 8e-63
AE014297-2789|AAF55764.1| 273|Drosophila melanogaster CG10881-P... 208 7e-54
BT001728-1|AAN71483.1| 470|Drosophila melanogaster RE70333p pro... 33 0.63
AE014296-817|AAF47879.2| 470|Drosophila melanogaster CG1316-PA ... 33 0.63
L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding pr... 32 0.83
AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p pro... 32 0.83
AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p pro... 32 0.83
AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-bind... 32 0.83
AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,... 32 0.83
AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,... 32 0.83
L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding pr... 31 1.4
AY118452-1|AAM49821.1| 318|Drosophila melanogaster AT09813p pro... 31 1.4
AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p pro... 31 1.4
AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA... 31 1.4
AE014296-2502|AAF49643.2| 318|Drosophila melanogaster CG7804-PA... 31 1.4
L23873-1|AAA28862.1| 48|Drosophila melanogaster Rox2 protein. 30 3.3
AY113652-1|AAM29657.1| 918|Drosophila melanogaster SD14970p pro... 30 4.4
AE014296-1695|AAF50237.1| 918|Drosophila melanogaster CG3335-PA... 30 4.4
>AY118933-1|AAM50793.1| 269|Drosophila melanogaster LD24347p
protein.
Length = 269
Score = 238 bits (582), Expect = 8e-63
Identities = 124/246 (50%), Positives = 161/246 (65%), Gaps = 7/246 (2%)
Frame = +2
Query: 107 MPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV 286
MP E ++SWADEVE+D G LPP +E VENG K VTEYKY+ D+KK K+VRTYKI K+V
Sbjct: 1 MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKVVRTYKISKQV 60
Query: 287 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 466
V K++AKR+TW+KFGDS +DKPGPN TT V+E++ MQF+ SKE+ ++ +D LD P
Sbjct: 61 VPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED-EKANDPLLD----P 115
Query: 467 SSNVIFKCRTCQGDHLTLYCPFKHTQI---XXXXXXXXXXXXXXXXXXSNKYIPP----S 625
+ N I KCR C G+H ++ CP+K T + S KY+PP S
Sbjct: 116 TKN-IAKCRICNGEHWSVNCPYKGTAMDTNMMEKKASAAAAAAVDAPKSGKYVPPFLKDS 174
Query: 626 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 805
G + R R+D AIRISNLS EAD+++LVK GP K+YLA++K+TG CK
Sbjct: 175 QKGALGMRG-----RDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCK 229
Query: 806 GFAYVH 823
GFAYVH
Sbjct: 230 GFAYVH 235
>AE014298-421|AAF45796.1| 269|Drosophila melanogaster CG8636-PA
protein.
Length = 269
Score = 238 bits (582), Expect = 8e-63
Identities = 124/246 (50%), Positives = 161/246 (65%), Gaps = 7/246 (2%)
Frame = +2
Query: 107 MPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV 286
MP E ++SWADEVE+D G LPP +E VENG K VTEYKY+ D+KK K+VRTYKI K+V
Sbjct: 1 MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKVVRTYKISKQV 60
Query: 287 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 466
V K++AKR+TW+KFGDS +DKPGPN TT V+E++ MQF+ SKE+ ++ +D LD P
Sbjct: 61 VPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED-EKANDPLLD----P 115
Query: 467 SSNVIFKCRTCQGDHLTLYCPFKHTQI---XXXXXXXXXXXXXXXXXXSNKYIPP----S 625
+ N I KCR C G+H ++ CP+K T + S KY+PP S
Sbjct: 116 TKN-IAKCRICNGEHWSVNCPYKGTAMDTNMMEKKASAAAAAAVDAPKSGKYVPPFLKDS 174
Query: 626 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 805
G + R R+D AIRISNLS EAD+++LVK GP K+YLA++K+TG CK
Sbjct: 175 QKGALGMRG-----RDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGLCK 229
Query: 806 GFAYVH 823
GFAYVH
Sbjct: 230 GFAYVH 235
>AE014297-2789|AAF55764.1| 273|Drosophila melanogaster CG10881-PA
protein.
Length = 273
Score = 208 bits (508), Expect = 7e-54
Identities = 113/243 (46%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
Frame = +2
Query: 125 FQASWADEVEIDQ-GVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI 301
F SWADEV+ D LPP +E ++ K VTEYK+++D KKVK+VRT+KIEK++V K++
Sbjct: 4 FVTSWADEVDADYVDGLPPSNEYIKGDFKYVTEYKFNDDGKKVKVVRTFKIEKQIVPKAV 63
Query: 302 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVI 481
A+R+ W KFGDS SDKPGPN TT +E++FMQFI SK+ Q + +LD P N I
Sbjct: 64 ARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQFIGSKDFDQ-THETQLD----PGKN-I 117
Query: 482 FKCRTCQGDHLTLYCPFKHTQIXXXXXXXXXXXXXXXXXXSN-----KYIPP--SSAGRI 640
KCR C G+H ++ CP+K T + S+ KY+PP G I
Sbjct: 118 AKCRICNGEHWSVNCPYKGTSMDSKTVMETKANAAAAAAISDPSKTGKYVPPFMKDGGGI 177
Query: 641 PG-RDQPPVR-REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 814
G ++ R R+D +A+RISNLS E D+++LVK GP K+YLA+EK++G CKGFA
Sbjct: 178 SGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNSGLCKGFA 237
Query: 815 YVH 823
YVH
Sbjct: 238 YVH 240
>BT001728-1|AAN71483.1| 470|Drosophila melanogaster RE70333p
protein.
Length = 470
Score = 32.7 bits (71), Expect = 0.63
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 713 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
A E DI + +G V + + KEK+ G+ KGF YV
Sbjct: 133 ATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYV 168
>AE014296-817|AAF47879.2| 470|Drosophila melanogaster CG1316-PA
protein.
Length = 470
Score = 32.7 bits (71), Expect = 0.63
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 713 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
A E DI + +G V + + KEK+ G+ KGF YV
Sbjct: 133 ATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYV 168
>L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding
protein protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p
protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p
protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-binding
protein II protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,
isoform B protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,
isoform A protein.
Length = 224
Score = 32.3 bits (70), Expect = 0.83
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 142
>L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding
protein protein.
Length = 416
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 686 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 817
I I L N+ + + +L+ FG + L K+ +TG KG+A+
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAF 252
>AY118452-1|AAM49821.1| 318|Drosophila melanogaster AT09813p
protein.
Length = 318
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ LS E D+ + + +G V K + K+ +GH KGF +V
Sbjct: 111 VLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFV 153
>AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p
protein.
Length = 416
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 686 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 817
I I L N+ + + +L+ FG + L K+ +TG KG+A+
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAF 252
>AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA
protein.
Length = 416
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 686 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 817
I I L N+ + + +L+ FG + L K+ +TG KG+A+
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAF 252
>AE014296-2502|AAF49643.2| 318|Drosophila melanogaster CG7804-PA
protein.
Length = 318
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ LS E D+ + + +G V K + K+ +GH KGF +V
Sbjct: 111 VLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFV 153
>L23873-1|AAA28862.1| 48|Drosophila melanogaster Rox2 protein.
Length = 48
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 683 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
++ + N+ A +++ G G ++++ + K+ GH KGFAY+
Sbjct: 1 SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYI 46
>AY113652-1|AAM29657.1| 918|Drosophila melanogaster SD14970p
protein.
Length = 918
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 698 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
NL+ E D+ L + FGPV ++ L +K T KGF V
Sbjct: 370 NLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTV 410
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 665 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH--CKGFAYV 820
+++ T I + N+ A ++ D+ K FG + L + K+ +TG +GF +V
Sbjct: 780 KKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFV 833
>AE014296-1695|AAF50237.1| 918|Drosophila melanogaster CG3335-PA
protein.
Length = 918
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 698 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
NL+ E D+ L + FGPV ++ L +K T KGF V
Sbjct: 370 NLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTV 410
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 665 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH--CKGFAYV 820
+++ T I + N+ A ++ D+ K FG + L + K+ +TG +GF +V
Sbjct: 780 KKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFV 833
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,825,626
Number of Sequences: 53049
Number of extensions: 677482
Number of successful extensions: 2771
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2764
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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