Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22k01
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 89 5e-18
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 37 0.020
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.062
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 35 0.062
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 31 1.0
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 1.0
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 29 3.1
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 3.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 3.1
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 29 3.1
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 3.1
Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.0
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 29 4.0
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 29 4.0
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 5.3
U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical pr... 29 5.3
U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 29 5.3
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.1
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 28 7.1
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 28 7.1
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 28 7.1
AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical... 28 7.1
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 7.1
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 9.3
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 9.3
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 9.3
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 88.6 bits (210), Expect = 5e-18
Identities = 69/230 (30%), Positives = 103/230 (44%), Gaps = 1/230 (0%)
Frame = +2
Query: 134 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 313
SWA+ VE D P + +G + T + + D + K+V +K+ + V K +A RK
Sbjct: 9 SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64
Query: 314 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCR 493
W KFG + GP ATT VAE+V MQF ++ Q D E +S CR
Sbjct: 65 KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKTTSRE--HCR 122
Query: 494 TCQG-DHLTLYCPFKHTQIXXXXXXXXXXXXXXXXXXSNKYIPPSSAGRIPGRDQPPVRR 670
C+G DH + +CP+K + + G P Q R
Sbjct: 123 HCKGNDHWSTHCPYK----------VMYQLDEEADADKDTEKDRMAMGMRPDGRQIDRNR 172
Query: 671 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D R++NL E ++ DL G V ++++A++K TG KGFA+V
Sbjct: 173 SDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFV 222
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 36.7 bits (81), Expect = 0.020
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 823
+ NLS++ E D+ D+ FG ++K L ++ +G+ +GF +++
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIY 123
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.062
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ NL E D+ L K +G V ++ + +K TG CKGFA V
Sbjct: 283 LRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIV 325
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 35.1 bits (77), Expect = 0.062
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 140 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKT 316
AD I +GV P E+ + NGL V E Y+ND +K +T + +V S K K
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380
Query: 317 WSKFGDSASD 346
+ D SD
Sbjct: 381 QEESDDEESD 390
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 674 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D ++ + N+ A +I+ G G V ++ + ++ +GH KGFAYV
Sbjct: 76 DAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYV 124
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 692 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 823
+ NLS E I + + FG + + K K +GH KG A+VH
Sbjct: 267 LRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVH 310
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 623 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAV---EADIDDLVKGFGPVHKLYLAKEKST 793
SS GR + Q V+++ + I + + E ++ + FG V ++ +A+ + T
Sbjct: 10 SSGGRKQPQKQDKVQKKQLKKIYVVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRT 69
Query: 794 GHCKGFAYV 820
G+ KG+AYV
Sbjct: 70 GNHKGWAYV 78
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 385
+ YKI +S + KRKT KFGD A D P NP TT+ E
Sbjct: 6 ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 656 PPVRRE----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
PP E D ++ I N+ + +I++ KG G + K + K+K T K FAY+
Sbjct: 43 PPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYI 101
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 143 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTY-KIEKRVVSKSIAKRKTW 319
D V+ID+ + +E+V+ +IVT++ + +V I+ Y K+ ++ K IA R+ W
Sbjct: 90 DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 701 LSNFAVEADIDDLVKGF----GPVHKLYLAKEKSTGHCKGFAYVH 823
+ N E D L+ F GPV + + ++K TG KGFA+V+
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVN 294
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 5 PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 130
P ++ E S++PT + ++HT+ + CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 5 PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 130
P ++ E S++PT + ++HT+ + CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 677 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+T+++I NLS D+ + +G + +++ ++K + KGF +V
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 677 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+T+++I NLS D+ + +G + +++ ++K + KGF +V
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical
protein F02E9.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 143 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 322
D + + PPS LK + K D +K+ K + K KR+ S++I K WS
Sbjct: 47 DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103
Query: 323 KFGDSASDKPGPNPATTNVAEDV 391
+F + T + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 656 PPVRRE----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
PP E D ++ I N+ + ++++ KG G + + + K+K T K FAY+
Sbjct: 49 PPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYI 107
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 668 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
+ D ++ + N+ + ++I++ G V ++ + K+K TG+ K FA+V
Sbjct: 42 KTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFV 92
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 4 SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 105
+S+ S + YL+++ S+D S+W I+YM R
Sbjct: 920 TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 185 EVVENGLKIVTEYKYDNDNKKVKIV 259
+ V+ K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 185 EVVENGLKIVTEYKYDNDNKKVKIV 259
+ V+ K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431
>U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical
protein ZK813.4a protein.
Length = 171
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 490 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 344
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156
>U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical
protein ZK813.4b protein.
Length = 152
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 490 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 344
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 89 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 4 SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 105
+S+ S + YL+++ S+D S+W I+YM R
Sbjct: 920 TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 143 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK----- 307
DEVE+ + V+N KIV + K++ + + +R K+E ++ K IAK
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389
Query: 308 RKTWSKFG 331
R+ KFG
Sbjct: 390 REALGKFG 397
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 194 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 361
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 362 PATTNVAEDVFMQFITSKEESQRPDD 439
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 656 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
P V R I + L E+ + +L+ GPV + + K++ T + +GF +V
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFV 59
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 656 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
P V R I + L E+ + +L+ GPV + + K++ T + +GF +V
Sbjct: 15 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFV 69
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 650 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V
Sbjct: 43 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 95
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 650 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V
Sbjct: 63 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 115
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 650 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 820
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V
Sbjct: 64 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 116
>AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical
protein C35E7.3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 514 QMVSLTCTTLKDNIAGWWLKTIKLP 440
Q V TC K + G LKTIKLP
Sbjct: 91 QRVQCTCCEYKKELVGCHLKTIKLP 115
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 194 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 361
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 362 PATTNVAEDVFMQFITSKEESQRPDD 439
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 749 FGPVHKLYLAKEKSTGHCKGFAYV 820
FGP+ + ++ + +TGH K FA+V
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 749 FGPVHKLYLAKEKSTGHCKGFAYV 820
FGP+ + ++ + +TGH K FA+V
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 749 FGPVHKLYLAKEKSTGHCKGFAYV 820
FGP+ + ++ + +TGH K FA+V
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFV 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,836
Number of Sequences: 27780
Number of extensions: 345909
Number of successful extensions: 1177
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -