Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22j20
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209... 31 0.69
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 29 2.8
03_06_0624 - 35164215-35164610 29 3.7
11_06_0480 - 24081075-24081723,24083427-24084202 29 4.9
06_01_0772 + 5770502-5770619,5771035-5772335 28 6.4
11_03_0021 + 9010846-9011672,9011753-9013700 28 8.5
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 8.5
04_04_0988 - 29941838-29941889,29942113-29942239,29942345-299423... 28 8.5
02_05_1340 + 35797923-35799881 28 8.5
>01_06_0790 +
32019972-32020101,32020461-32020657,32020790-32020993,
32021444-32021645,32021798-32021886,32022567-32022662,
32022710-32022814,32023516-32023556,32023685-32023777,
32023853-32023970,32024488-32024578,32024693-32024766,
32025008-32025187,32025643-32025681
Length = 552
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 636 LSWLCLGHCSIHAHFENLAP--RLMATVGSLSQSLLDIGGPNTA 511
LSW CL HC +H LA R++ T+ S ++ +++ G T+
Sbjct: 361 LSWHCLTHCMVHVKKVQLANRFRVLRTILSQAKIIMEDGAETTS 404
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 419 FFNAHCSRSPSGRFWDTAPSSSRRRVFSLGRLSGTTKEVNDCSY 288
+ H S S RFW T+P+S RR SL S TK + C +
Sbjct: 144 YLQVHPSDSRDLRFWPTSPASFRR---SLDAYSSETKSLALCLF 184
>03_06_0624 - 35164215-35164610
Length = 131
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 261 HRPTVYYRNIGAVIYFFCGPREASQ 335
HRP G+V YFFC PR S+
Sbjct: 57 HRPAPGTHGSGSVWYFFCSPRYTSK 81
>11_06_0480 - 24081075-24081723,24083427-24084202
Length = 474
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 361 DGAVSQNRPEGDREQWALKKHRD 429
DG ++ + P GDR WA+ HRD
Sbjct: 90 DGDLTASVPAGDRAWWAVVDHRD 112
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 678 PPLRNHLADELSNRLSWLCLGHCSIHAHFEN 586
PP+ N +A + + LSW+ C++H H ++
Sbjct: 123 PPVVNLVAIDTGSTLSWVQCQPCAVHCHTQS 153
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 293 SYVPVIDGGPVAN-REPQRRLLIKTNDSWQILPTTTMTKSKEQRHFLLFNTHHIIPF 126
++V +IDG ++ +E RR+ ++ NDS ++ T +T R +F +P+
Sbjct: 515 NFVTIIDGHKCSSLQEKIRRVSLQFNDSEDVVVPTNITNRSCVRSLSIFGITKQVPY 571
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 424 GASSTPTARDPPQGGSGIPHRLLQGGVCSHWDASLGP 314
G+ T A DP +GGS I +++G S +D GP
Sbjct: 461 GSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGP 497
>04_04_0988 -
29941838-29941889,29942113-29942239,29942345-29942392,
29943014-29943088,29943178-29943241,29943316-29943469,
29943721-29943924,29944002-29944190,29944283-29944488,
29944666-29944760,29944846-29944968,29945274-29945322,
29945709-29945780
Length = 485
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 321 WDHKRSK*LLLCSCNRRWAGG 259
WDHK L + S R W+GG
Sbjct: 423 WDHKEMSDLHMVSLRRNWSGG 443
>02_05_1340 + 35797923-35799881
Length = 652
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 392 GIASSGR*RSTV--MYLHQDQSEAP*WACTISWTA 490
G+A+ G +STV MYLH++Q+E A +S +A
Sbjct: 364 GVAADGTRQSTVKRMYLHEEQAEGVHAAALVSQSA 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,788,732
Number of Sequences: 37544
Number of extensions: 566596
Number of successful extensions: 1671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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