Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22j20
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein. 31 5.4
BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome ... 31 5.4
BC057394-1|AAH57394.1| 1562|Homo sapiens Rho guanine nucleotide ... 31 5.4
BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome ... 31 5.4
AL356104-3|CAH72939.1| 1562|Homo sapiens Rho guanine nucleotide ... 31 5.4
AL356104-2|CAH72940.1| 1522|Homo sapiens Rho guanine nucleotide ... 31 5.4
AL157713-2|CAH70128.1| 1562|Homo sapiens Rho guanine nucleotide ... 31 5.4
AL157713-1|CAH70127.1| 1522|Homo sapiens Rho guanine nucleotide ... 31 5.4
AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome ass... 31 5.4
AB002378-1|BAA20834.2| 1539|Homo sapiens KIAA0380 protein protein. 31 5.4
>D80009-1|BAA11504.2| 1285|Homo sapiens KIAA0187 protein.
Length = 1285
Score = 30.7 bits (66), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 266 PVANREPQRRLLIKTNDSWQILPTTTMTKSKEQRHFLLFNTHH 138
P REP R ++ D+ + + M K+KEQRH L N H
Sbjct: 1199 PAVIREPHERKILALLDALSTVHSQKMKKAKEQRH--LHNKEH 1239
>BC150252-1|AAI50253.1| 1282|Homo sapiens BMS1 homolog, ribosome
assembly protein (yeast) protein.
Length = 1282
Score = 30.7 bits (66), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 266 PVANREPQRRLLIKTNDSWQILPTTTMTKSKEQRHFLLFNTHH 138
P REP R ++ D+ + + M K+KEQRH L N H
Sbjct: 1196 PAVIREPHERKILALLDALSTVHSQKMKKAKEQRH--LHNKEH 1236
>BC057394-1|AAH57394.1| 1562|Homo sapiens Rho guanine nucleotide
exchange factor (GEF) 11 protein.
Length = 1562
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 305 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 345
>BC043345-1|AAH43345.1| 1282|Homo sapiens BMS1 homolog, ribosome
assembly protein (yeast) protein.
Length = 1282
Score = 30.7 bits (66), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 266 PVANREPQRRLLIKTNDSWQILPTTTMTKSKEQRHFLLFNTHH 138
P REP R ++ D+ + + M K+KEQRH L N H
Sbjct: 1196 PAVIREPHERKILALLDALSTVHSQKMKKAKEQRH--LHNKEH 1236
>AL356104-3|CAH72939.1| 1562|Homo sapiens Rho guanine nucleotide
exchange factor (GEF) 11 protein.
Length = 1562
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 305 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 345
>AL356104-2|CAH72940.1| 1522|Homo sapiens Rho guanine nucleotide
exchange factor (GEF) 11 protein.
Length = 1522
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 265 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 305
>AL157713-2|CAH70128.1| 1562|Homo sapiens Rho guanine nucleotide
exchange factor (GEF) 11 protein.
Length = 1562
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 305 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 345
>AL157713-1|CAH70127.1| 1522|Homo sapiens Rho guanine nucleotide
exchange factor (GEF) 11 protein.
Length = 1522
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 265 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 305
>AL022344-4|CAI23617.1| 1282|Homo sapiens BMS1-like, ribosome assembly
protein (yeast) protein.
Length = 1282
Score = 30.7 bits (66), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 266 PVANREPQRRLLIKTNDSWQILPTTTMTKSKEQRHFLLFNTHH 138
P REP R ++ D+ + + M K+KEQRH L N H
Sbjct: 1196 PAVIREPHERKILALLDALSTVHSQKMKKAKEQRH--LHNKEH 1236
>AB002378-1|BAA20834.2| 1539|Homo sapiens KIAA0380 protein protein.
Length = 1539
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 492 HHRLEAALCLVPRCLANSGLTSQPSPLVGGPSSRSEHGYCND 617
HHR + + VP + G+ P PL+ GP + GY N+
Sbjct: 282 HHRRQGSDAAVPST-GDQGVDQSPKPLIIGPEEDYDPGYFNN 322
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,728,760
Number of Sequences: 237096
Number of extensions: 2898462
Number of successful extensions: 14735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14735
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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