Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j20
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-4|AAF99969.1|  159|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AF100656-4|AAF99969.1|  159|Caenorhabditis elegans Hypothetical
           protein F49F1.5 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 466 PLRCLTLILM*VHHGASSTPTARDPPQGGSGIPHRLLQGGVCSHWDAS 323
           P R +T  L  VH G  +T      P+  S       +  +C HW A+
Sbjct: 88  PTRKITSTLRPVHVGTQTTTVKPTSPKTSSTASEPCYENPICPHWAAN 135


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 341 FSLGRLSGTTKEVNDCSYVPVIDGGPVANREPQRRLLIKTNDSWQILPT 195
           F+ G  +G  K+V      PV   GP+A+  PQ++  +    + QI PT
Sbjct: 225 FTRGHDNGGAKKVFIFEQTPVRKQGPIASSTPQQKQRLADGANNQIPPT 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,445
Number of Sequences: 27780
Number of extensions: 428550
Number of successful extensions: 1129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)