Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j20
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.54 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 415 STPTARDPPQGGSGIPHRLLQGGVCS 338
           +TP    PP+G  G+P  ++Q    S
Sbjct: 391 ATPCTPSPPRGPGGVPTSVIQAATSS 416


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 262 WQIANHSDVY*SKQMTAGRFFLRLQ*RSPKNN 167
           + + +H+D+Y  K    G  +LR++  + K N
Sbjct: 153 YDLKSHNDIYCEKYEKNGETYLRIKKHAVKFN 184


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 592 RELGPPTNGDGWLVKPEFARHRGTKHSAASRRW 494
           ++ GPP +G+G ++ P    +  +       RW
Sbjct: 352 KDQGPPNDGNGNILSPSIHDNICSNGWICEHRW 384


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 335 LGRLSGTTKEVNDCSYVPVIDG 270
           +GR+  +  +V DC YV    G
Sbjct: 127 IGRIQWSKLQVFDCRYVTTTSG 148


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 555  SQPSPLVGGPSSRSEHG-YCN-DRD 623
            ++P P  GG  +R + G Y N DRD
Sbjct: 1022 NKPKPATGGKGTRPKRGKYRNYDRD 1046


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,917
Number of Sequences: 438
Number of extensions: 5308
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)