Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22j19
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 31 0.22
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.39
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.6
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.8
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 4.8
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 6.3
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 26 6.3
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 8.4
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 30.7 bits (66), Expect = 0.22
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +1
Query: 325 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 504
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 505 AKY-TASDAYASTTLISAVVRXT-TTFKSSITERAEKCLTA 621
++Y + YA T S + T FK++ + + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.39
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +1
Query: 286 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 459
E+TT + M+ + T + + + +T ++ + + ET + A+ T P +T
Sbjct: 42 EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99
Query: 460 DAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRXTTTFKSSITERAEKCLTALKARCL 639
+T+T P + T + +TT+ V T + ++T E+ T L +
Sbjct: 100 TIPTVETTTTP--MVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157
Query: 640 TSPV 651
T+P+
Sbjct: 158 TTPM 161
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -3
Query: 593 VILDLNVVVXRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 414
++ LN+ V + +++++E A + I PG +E+ ASG + T+ +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139
Query: 413 VSVFVD 396
++ VD
Sbjct: 140 IAYVVD 145
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/100 (20%), Positives = 41/100 (41%)
Frame = +1
Query: 367 STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTL 546
+++A S ST + S +PT + T T+P ++ + ++ +
Sbjct: 735 NSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSS 794
Query: 547 ISAVVRXTTTFKSSITERAEKCLTALKARCLTSPVACGTG 666
+++ TTT + +TE + T + + A GTG
Sbjct: 795 VTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.6
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Frame = +1
Query: 283 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 462
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 463 AWCAQTSTKPGNRIAKYTASDAYASTTLI--SAVVRXTTTFKSSITERAEKCLTALKARC 636
TS+ N T+S S+T I S+++ +T SS + +T+ A
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALN 451
Query: 637 LTSPV 651
++P+
Sbjct: 452 TSTPI 456
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 372 CSAGRVCEINEHGDAMCNCIKDC 440
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 373 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 543
A+ VSA + TP V+++ + + TS + I+ T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = -3
Query: 404 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 225
++ F + + V+ RV+ VD + + + + + + L +SLL+ A + +
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413
Query: 224 VFSLRDVPAAELLRRWTFSS 165
++S D A E L ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 278 FCLMVSLLVQALRHSVLDVFSLRD 207
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 559 PRH*SELSRHKHRWRYTSQSD 497
PRH E + H W Y+S D
Sbjct: 52 PRHHKEHKKSHHHWEYSSDDD 72
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 6.3
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +1
Query: 304 TRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTP-DAWCAQT 480
++SL ST T + A ++ S + + T S T TP +
Sbjct: 77 SKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSN 136
Query: 481 STKPGNRIAKYTASDAYASTTLISAVVRXTTTFKSSITERAEKCLTALKARCLTSPVACG 660
ST P + + S + +TT+IS + TTTF + E + A +T+ + G
Sbjct: 137 STIPSSS----SISASTITTTIISGSTQFTTTFVDQSIDTVEVVIPT--AGYITTTLTSG 190
Query: 661 TGFLXSCAT 687
+ + S T
Sbjct: 191 SSYPVSTTT 199
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 421 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 564
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 114 CK*PRSLGP-TQEDPSSCLSMIRFYVKQAAIASKAGG 7
CK + L P + E+ S C+S +R+ V + S GG
Sbjct: 6 CKRLQKLAPKSPENQSKCISRLRYMVMLDQVESDEGG 42
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 452 CLVGTVLDAVTHGVSVFVDFADT-SC 378
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,181
Number of Sequences: 5004
Number of extensions: 49193
Number of successful extensions: 138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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