Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22j17
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 162 4e-41
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 47 3e-06
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 44 3e-05
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 39 7e-04
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 39 9e-04
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 38 0.002
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 37 0.004
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 36 0.005
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 34 0.019
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 33 0.058
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 31 0.23
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.23
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 30 0.31
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 29 0.54
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 29 0.72
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.7
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 28 1.7
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 28 1.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.2
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.2
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 3.8
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 5.0
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 5.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 6.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.7
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 6.7
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 162 bits (394), Expect = 4e-41
Identities = 73/200 (36%), Positives = 120/200 (60%), Gaps = 1/200 (0%)
Frame = +1
Query: 139 MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTA 318
MK + F NL+GT++ KG+++F+ DG ++SPVGNR+++YNLK N S T FE+H N +
Sbjct: 1 MKTEFGFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISH 60
Query: 319 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVF 498
+ ++P LL+V E+G + + VLH + FK V A++FSP+GK+FAV +
Sbjct: 61 IALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQ 120
Query: 499 VMTAPVHF-TGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLEN 675
V P E+ PF++ R + D++ + WS+ SR SKD T ++H+V+ +E
Sbjct: 121 VWRTPNSLEEREFAPFVLHREYTGHFDDIVSISWSADSRFFISTSKDLTARLHSVDPIEG 180
Query: 676 ITMYSLSGHTDKIIGVFFER 735
+L+GH + ++ FF +
Sbjct: 181 FHPCALTGHKNTVVSGFFSK 200
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 46.8 bits (106), Expect = 3e-06
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Frame = +1
Query: 202 FSKDGNCVISPVGNR-ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 378
FSKDG ++S G+R + +++++ + L + T V +P+G + A + +
Sbjct: 384 FSKDGKTLVSGSGDRTVCLWDVEAGEQK-LILHTDDGVTTVMFSPDGQFIAAGSLDKVIR 442
Query: 379 IISLTTSVVLHKYKFKQQVNAVKFSPDGKYF-AVCCDNTV----FVMTAPVHFTGEYRPF 543
I + + ++V + ++ V +V FSPDGKY + DNT+ + V +
Sbjct: 443 IWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMYKEGG 502
Query: 544 IMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGV 723
I K+ F D + + S + + GSKD T + + + + +L GH + +I V
Sbjct: 503 ICKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFWSPD--SPHSQLTLQGHNNSVISV 560
Score = 35.1 bits (77), Expect = 0.011
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +1
Query: 403 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALD-E 579
+LH + + V+FS DGK+ A C+ V TG+ + + K+ D
Sbjct: 280 LLHTLEHTSVICYVRFSADGKFLATGCNRAAMVFNVE---TGKLITLLQEESSKREGDLY 336
Query: 580 VTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFFERKSLDLI 753
V + +S + LA G +D +I + + L+GH +I + F + L+
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDI--AQKRVYRLLTGHEQEIYSLDFSKDGKTLV 392
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 43.6 bits (98), Expect = 3e-05
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +1
Query: 328 APNGMTLLAVTEKGEAQIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDNTVFVM 504
+P+ LL+ +E A++ S+ T L YK V V F P G YFA +
Sbjct: 388 SPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHD----Q 443
Query: 505 TAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITM 684
TA + P RVF L +V C+ + S + GS D T ++ V ++ +
Sbjct: 444 TAQLWSCDHIYPL---RVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRV 500
Query: 685 YSLSGHTDKIIGV 723
+ +GHT + V
Sbjct: 501 F--NGHTQPVTAV 511
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 39.1 bits (87), Expect = 7e-04
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = +1
Query: 319 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDNTV 495
V I+P +L+ +E G ++ S T + KY + V+FSP G YFA +
Sbjct: 409 VSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYFATASHD-- 466
Query: 496 FVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTV 660
TA + P RVF ++V C+ + + LA GS D TT++ V
Sbjct: 467 --QTARLWDVEHAAPL---RVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDV 516
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 38.7 bits (86), Expect = 9e-04
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 6/206 (2%)
Frame = +1
Query: 130 LVTMKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRIT-IYNLKQNKSNTLSFESHY 306
L T K Y F +Y + FS +G ++S G+R +++++ + L E
Sbjct: 389 LSTQKVRYVFSGHEQDIY---SLDFSHNGRFIVSGSGDRTARLWDVETGQC-ILKLEIEN 444
Query: 307 NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK-YFAVCC 483
TA+ I+PN + + ++ S++ ++V K+ V ++ FSPD +
Sbjct: 445 GVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSL 504
Query: 484 DNTVFV----MTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKI 651
D T+ V T V + I K + D V + S SR GSKD + +
Sbjct: 505 DKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQF 564
Query: 652 HTVEYLENITMYSLSGHTDKIIGVFF 729
++ + + GH + +I V F
Sbjct: 565 WDLQ--TGQSYLTCQGHKNSVISVCF 588
Score = 28.7 bits (61), Expect = 0.95
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Frame = +1
Query: 403 VLHKYKFKQQVNAVKFSPDGKYFAVCCD---NTVFVMTAPVHFT-GEYRPFIMKRVFKKA 570
++H + V VKFS +GKY A C+ N V T FT E P + ++
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCNQAANVFDVQTGKKLFTLHEESPDPSRDLY--- 362
Query: 571 LDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFF 729
V + +S + L G++D K+ + + Y SGH I + F
Sbjct: 363 ---VRTIAFSPDGKYLVTGTEDRQIKLWDLSTQK--VRYVFSGHEQDIYSLDF 410
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Frame = +1
Query: 391 TTSVVLHKYKFKQQVNAVKFSPDGKYFAVCC-DNTVFVMTAPVHFTGEYRPFIMKRVFKK 567
+T + + ++ VN FSPDG+ A D++V + TG++ + V
Sbjct: 378 STKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGK---TGKFLATLRGHVAA- 433
Query: 568 ALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGV 723
V WS+ SRLL S+DTT K+ V + L GH D++ V
Sbjct: 434 ----VYQCAWSTDSRLLVSSSQDTTLKVWDVR--SKKMKFDLPGHEDQVFAV 479
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 613 LLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKI 714
LLA GSKD T +I V+ +++LSGHT I
Sbjct: 241 LLASGSKDNTVRIWNVKL--RTLLFTLSGHTAPI 272
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 36.7 bits (81), Expect = 0.004
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +1
Query: 415 YKF-KQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCL 591
Y F K +N FSPD +Y A+ + + F E+ + VF +TC+
Sbjct: 318 YAFSKSPINGFCFSPDYQYLALVSERGTLKL---FDFVKEH----VLDVFHSYFAGLTCV 370
Query: 592 DWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFFE 732
WS + +A+G KD I++ + + GH + V F+
Sbjct: 371 TWSPDGKFIAIGGKDDLVSIYSFPLRKLVA--RCQGHKSWVTDVIFD 415
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 36.3 bits (80), Expect = 0.005
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Frame = +1
Query: 298 SHYNYT----AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 465
SHY +T AV I+P+G + G + L S L+ + K +NA+ FSP+
Sbjct: 187 SHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRY 246
Query: 466 YFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALD-EVTCLDWSSCSRLLAVGSKDTT 642
+ +++ + + V KK+ + E L WS + L G D
Sbjct: 247 WLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPECISLTWSPDGQTLFSGWTDNL 306
Query: 643 TKIHTV 660
++ V
Sbjct: 307 IRVWQV 312
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.3 bits (75), Expect = 0.019
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 421 FKQQVNAVKFSPDGKYFAV-CCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDW 597
F V AVK SPDG++ A DNTV V++ + F+ ++ L V +D
Sbjct: 533 FTDDVLAVKISPDGRFVAASLLDNTV-----KVYYLDSLKFFL--NLYGHKL-PVLSMDI 584
Query: 598 SSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFFE 732
S S+LL S D KI +++ + S+ H D I+ V F+
Sbjct: 585 SYDSKLLVTCSADKNVKIWGLDFGD--CHKSIFAHQDSIMEVTFQ 627
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 32.7 bits (71), Expect = 0.058
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 541 FIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIG 720
FI+ +++ + V CLD+ LL GS D+T I + + +Y GHTD ++G
Sbjct: 252 FILYKLYGHS-GSVLCLDFCRRRNLLVSGSSDSTIIIWDWQNRRPLKVY--FGHTDNVLG 308
Query: 721 V 723
V
Sbjct: 309 V 309
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 30.7 bits (66), Expect = 0.23
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +1
Query: 433 VNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSR 612
+ + +SPDGKY A C D + V V + R I R + + + W++ S
Sbjct: 482 ITCLAYSPDGKYLA-CGDASGKV----VLYDANSREVITSR-WAFHTGRILGMSWNAKST 535
Query: 613 LLAVGSKDTTTKIHTVE 663
LA S DT I++VE
Sbjct: 536 HLATASLDTNIHIYSVE 552
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 556 VFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKI 714
VF DEV + +S R LA SKD T I V L+ + + L GH D +
Sbjct: 208 VFHDHSDEVWQISYSHNGRYLASASKDKTAIIFDVVNLKRV--FRLIGHIDTV 258
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 574 DEVTCLDW-SSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKI 714
D+V+CLDW S +L GS D T KI + E + + ++ + +
Sbjct: 298 DKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENV 345
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 29.5 bits (63), Expect = 0.54
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 196 VLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMT--LLAVTEKG 369
VL + G+ VIS G I +++L + S++ + +A N LL+ G
Sbjct: 213 VLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDG 272
Query: 370 EAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 489
+I +++ V+H K+ + ++ SPD V N
Sbjct: 273 HVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVGMSN 312
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 29.1 bits (62), Expect = 0.72
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Frame = +1
Query: 223 VISPVGNRITIYNLKQNK-SNTLSFESHYNY-TAVDIAPNGMTLLAVTEKGEAQIISL-- 390
V + N++ +Y N + +F H T VD AP ++ ++ A +
Sbjct: 27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86
Query: 391 --TTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFK 564
T L + + V++SP+ FAV V + +F E ++ K + +
Sbjct: 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC---YFEQENDWWVSKHLKR 143
Query: 565 KALDEVTCLDWSSCSRLLAVGSKD 636
+ LDW + LLA G D
Sbjct: 144 PLRSTILSLDWHPNNVLLAAGCAD 167
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.7
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = +1
Query: 442 VKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLA 621
+K SP+G++ +VC + V TA +R + + KALD WS+ S +
Sbjct: 358 LKHSPNGRFVSVCGNGEYIVYTALA-----WR----NKAYGKALD----FAWSADSNVYG 404
Query: 622 VGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVF 726
+ D + IH + + LS DKI G F
Sbjct: 405 SRTSDRSIVIH--KNFKESNRLDLSYSCDKIFGGF 437
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 431 CCLNLYLCNTTEVVRLIICASPFSVTA 351
CCLN +LC + ++ +C + ++TA
Sbjct: 70 CCLNGWLCESNNILVCDVCRNKINLTA 96
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 40 FHDEYGVILYAVVSNIKSKFNRIIT*LRSTLVTMKFNYK 156
FH E GVI+ V S+ + +FN+ + TL T FN K
Sbjct: 1262 FHPEQGVIVAHVTSHPRLRFNQFL----GTLSTFGFNTK 1296
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 394 TSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVM 504
T +VL K + + + A+ P G Y ++ +T+F++
Sbjct: 629 TKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFIL 665
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 577 EVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFFER 735
+V +DW LLA GSKD K + + +L GH + I+ F++
Sbjct: 208 DVKTVDWHPSKGLLASGSKDNLVKFW--DPRTGTCIATLHGHKNTIMQASFQK 258
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 553 RVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGH 702
RV EV L+W+S LLA G D + + E +YS H
Sbjct: 368 RVLTAHRQEVCGLEWNSNENLLASGGNDNALMVW--DKFEEKPLYSFHNH 415
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 544 IMKRV--FKKALDEVTC-LDWSSCSRLLAVGSKDTTTKIHTVEYLENITMY 687
+M+RV KK E C L+W+ A G D I ++ LEN Y
Sbjct: 277 MMRRVHTIKKVHQEQVCGLEWNYDGTQFASGGNDNLVCIFDIDSLENKKFY 327
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 427 QQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 519
Q VN V+F+P+G A D ++ P +
Sbjct: 68 QAVNVVRFNPEGNILATAGDEGTIMLWVPTN 98
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 28 NRTQFHDEYGVILYAVVSNIKSKFNRII 111
+R ++ DEYGV+ + S ++F +I+
Sbjct: 1305 SRDEYQDEYGVLQEEIESTFSNRFLKIL 1332
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 238 GNRITIYNLKQNKSNTLSFESHY 306
G + T+YN +++ +TLSF+ +Y
Sbjct: 367 GLKQTVYNYQEDPKSTLSFKKNY 389
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 433 VNAVKFSPDGKYFAVCCDNTVFVM 504
V +V+FSP+G+Y A D+ V ++
Sbjct: 77 VTSVRFSPNGQYLASGSDDRVVII 100
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 520 FTGEYRPFI--MKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSL 693
F GE R ++ R+F+K DW CS + V S D T H E +N+ S
Sbjct: 267 FMGENRAYLGFFLRLFQKP-------DWK-CSIEMDVVSSDRTEIKHMYEKSKNLAPMSE 318
Query: 694 SGHTDKII 717
S +DK +
Sbjct: 319 SSDSDKTV 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,490
Number of Sequences: 5004
Number of extensions: 66349
Number of successful extensions: 234
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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