Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j15
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.9  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = +1

Query: 187 VGVSYCPRLMHPYHTRCD---AKTISQRTCDNPQIYEMA*HTCRFNDIPIHTAH*VSRRI 357
           + VSY      PY  R     +  + Q     P IY+     C+  ++PIH     + + 
Sbjct: 262 MNVSYAFPTFPPYSDRLKRLISTLLQQYPWQRPNIYQTFCEICKMRNVPIHIYDIYNGKN 321

Query: 358 FTVCRDSSGRFCE 396
            + C  S   + +
Sbjct: 322 VSSCNPSGSEYLQ 334


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 382 HWSRDRL*RSDEKLSGQCVWGC 317
           HW      R D ++  +C WGC
Sbjct: 306 HWDHSEESRIDREVRRRCFWGC 327


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 467 KKQDFALTWTLANLKMSNLKNLNQESLT 550
           K  DF  T TL ++  S+  N+N +S+T
Sbjct: 392 KLMDFGFTRTLRDMNASHPFNINSQSIT 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,292
Number of Sequences: 5004
Number of extensions: 59066
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)