Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j15
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    28   5.5  
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    28   5.5  
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    28   5.5  
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    28   7.3  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    27   9.6  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    27   9.6  

>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -3

Query: 309 TTGMLCHFVNLWIVASPLRNCLRITSCVIRMHQTWTVRYAYGYSKRFD 166
           TTG++ ++VN+ I A+  +N   +  C++   +   +RY Y +SK+ D
Sbjct: 59  TTGLIPYYVNV-ISATVFKNMTLV--CLVESSENTLIRYLYLFSKQLD 103


>Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical
           protein F53C11.9 protein.
          Length = 80

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 355 IFTVCRDSSGRFCEALIC*GYTCGWSRCDCNGDLVLDEETGLCVDLDAC 501
           IF  C     R CE           +RC+C    V+D  T  C+DL  C
Sbjct: 28  IFNDCGSPCDRTCENPNPMCIQMCKARCECKQGFVVDSNTKKCIDLKKC 76


>Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical
           protein F27C8.1 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -3

Query: 336 GSVYGDVIETTGMLCHFVNLWIVASPLRNCLRITSCVIRMHQTWTVRYAYGYSKRFDGFE 157
           G  Y  ++E  G    F+ LWI A  +R C   T  ++ +  T+ +   YG    F    
Sbjct: 96  GGDYAYIMEAFGPFVAFIRLWIEAIVVRPC---TVTIVAL--TFAI---YGLRPFFPDCA 147

Query: 156 PPDLEAHCL 130
           PPD+ A  L
Sbjct: 148 PPDVVAELL 156


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +2

Query: 356 SSQSVATPVVDSAKH*SARVIHVDGLGVIAMVIWY*TKKQDFALTWTLANLKMSNLKNLN 535
           +S S  TP VD      +  +HVD  G++++V W   ++ D  +   +    ++N  + N
Sbjct: 237 ASTSSRTPRVDCDDKSFSLDVHVDCAGLVSVVRWLLIRRFDVTVFLPVVYNNVNNYNSKN 296

Query: 536 QESL 547
            E L
Sbjct: 297 AELL 300


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 420 CITLADQCFAESTTGVATDCEDPT 349
           C  L D C A+ST G  T C++ T
Sbjct: 435 CDALCDACLADSTDGDGTGCDNMT 458


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 420 CITLADQCFAESTTGVATDCEDPT 349
           C  L D C A+ST G  T C++ T
Sbjct: 457 CDALCDACLADSTDGDGTGCDNMT 480


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 421 CGWSRCDCNGDLVLDEETGLCVDLDAC 501
           C  + C C   LV D  TG CV+ + C
Sbjct: 105 CMTNVCQCKKGLVRDSATGKCVEKNKC 131


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 430  SRCDCNGDLVLDEETGLCVDLDACQ 504
            S C+C      ++E+  CVD+D C+
Sbjct: 1699 SVCECEPGFRFEKESNSCVDIDECE 1723


>AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical
           protein Y105C5B.11 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 ESFTITVGVSYCPRLMHPYHTRCDAKTISQR-TC 267
           E   +  G   CPR    YH+ C  + +SQ+ TC
Sbjct: 533 EDIDLENGTVQCPRCTEIYHSHCATQWLSQKPTC 566


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 426  STCITLADQCFAESTTGVATDCEDPTRNSVGSVYGDVIETTGMLCHFVNLW 274
            S C  +  +C  E+T   AT   +    S+ ++YG V   T M C   N W
Sbjct: 2601 SKCRIVVIKCRGENTNQNATIFFNSNGQSLSAMYGQV--ATSMACSSSNTW 2649


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 426  STCITLADQCFAESTTGVATDCEDPTRNSVGSVYGDVIETTGMLCHFVNLW 274
            S C  +  +C  E+T   AT   +    S+ ++YG V   T M C   N W
Sbjct: 2601 SKCRIVVIKCRGENTNQNATIFFNSNGQSLSAMYGQV--ATSMACSSSNTW 2649


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 426  STCITLADQCFAESTTGVATDCEDPTRNSVGSVYGDVIETTGMLCHFVNLW 274
            S C  +  +C  E+T   AT   +    S+ ++YG V   T M C   N W
Sbjct: 2601 SKCRIVVIKCRGENTNQNATIFFNSNGQSLSAMYGQV--ATSMACSSSNTW 2649


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 426  STCITLADQCFAESTTGVATDCEDPTRNSVGSVYGDVIETTGMLCHFVNLW 274
            S C  +  +C  E+T   AT   +    S+ ++YG V   T M C   N W
Sbjct: 2601 SKCRIVVIKCRGENTNQNATIFFNSNGQSLSAMYGQV--ATSMACSSSNTW 2649


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 349 RRIFTVCRDSSGRFCEALIC*-GYTCGWSRCDCNGDLVLDEETGLCVDLDACQLKNV 516
           ++I  +C+ SS    E  +C   +  G + C C     L  E G C+D++ C++  V
Sbjct: 390 KKIIEMCKPSS----EGCVCRPSFVRGNNVCHCKDGYKL--ENGQCIDINECEIAGV 440


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 349 RRIFTVCRDSSGRFCEALIC*-GYTCGWSRCDCNGDLVLDEETGLCVDLDACQLKNV 516
           ++I  +C+ SS    E  +C   +  G + C C     L  E G C+D++ C++  V
Sbjct: 392 KKIIEMCKPSS----EGCVCRPSFVRGNNVCHCKDGYKL--ENGQCIDINECEIAGV 442


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 415 YTCGWSRC---DCNGDLVLDEETGLCVDLDACQ 504
           +TC   R    DC GDLV ++ TG C   + C+
Sbjct: 451 FTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,461
Number of Sequences: 27780
Number of extensions: 353717
Number of successful extensions: 1039
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)