Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j15
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.30 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.90 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.90 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 114 EHGRPNR-SYCTYSVNATTTTLT 49
           E  +PNR SYCT+ +NAT +  T
Sbjct: 2   EFKQPNRPSYCTWELNATNSPHT 24


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 168 DGFEPPDLEAHCLEDGCREHGRP 100
           D   P +LEA  L   CR HG P
Sbjct: 426 DELHPRELEAVNLGSACRIHGSP 448


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 224 YGCIKRGQYDTPTV 183
           YG  KRG+Y+ PTV
Sbjct: 606 YGRFKRGKYEEPTV 619


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 AVRSHRIVYYNRRRIVLSTFDASVSH 230
           A+ SH + Y N  + V S + A+  H
Sbjct: 267 ALSSHNLNYVNTEQFVKSQYQANNVH 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,106
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)