Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j05
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   4.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 324  AIIIDRFQHYGKSEIKDKNLAKASLAIINGAILLVDAVLTQRG 452
            A+ I +  H  + + + K LAK   +  +G ++ V+ +L Q+G
Sbjct: 1095 AVQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQKG 1137



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 205 TKVPVTSMPISASAL 161
           T VP+TS+P S++++
Sbjct: 852 TTVPITSLPASSTSI 866


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 687 IKRQFSYHLHTKKKTITKQNFVN*LK 610
           I+   +Y  HTK+KT+T  + V  LK
Sbjct: 67  IRDAVTYTEHTKRKTVTAMDVVYALK 92


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 28  STCLAIIIIKFK-FRSESWPSAGCLSSSFW 114
           S CL  ++   + F S SW +   L  SFW
Sbjct: 293 SGCLQFLVPMLQGFPSNSWVAINELQDSFW 322


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 28  STCLAIIIIKFK-FRSESWPSAGCLSSSFW 114
           S CL  ++   + F S SW +   L  SFW
Sbjct: 261 SGCLQFLVPMLQGFPSNSWVAINELQDSFW 290


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 461 YVHKIELHNQKRISNAA-YKYNAVLLGLLWSA 553
           Y+ ++ L +Q++ S    YK+N  +L +LW++
Sbjct: 76  YIIRMFLISQQKTSKLKIYKWNNQILHILWTS 107


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 461 YVHKIELHNQKRISNAA-YKYNAVLLGLLWSA 553
           Y+ ++ L +Q++ S    YK+N  +L +LW++
Sbjct: 59  YIIRMFLISQQKTSKLKIYKWNNQILHILWTS 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,650
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)