Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j04
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.9  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   2.5  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    27   4.4  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   5.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   7.6  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   7.6  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   7.6  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 249 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNELWTLLRLDRXXXXXXXXXXGNMLQRP 425
           S + S+ D+ H K L+++EIL  ++  RGQ + +L +   L +             L   
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL-SSFPLLKVFSSVFKVAYSKALLDA 248

Query: 426 ALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVE 536
             LF +  E+ + E  GI+++ + E    K + +VV+
Sbjct: 249 EKLFPSIDEAAIAEDIGILIEDL-ESDACKFSHSVVD 284


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 324 WPFRHVKSLHDPKVLDEYLCLNANETT 244
           WP   +KS+  P  +   +CL  NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 655 LYGHFISTG---IHVPSAREKYASGEAACKPNELKNMPQSKTVSTTAL 521
           LY +  S G   IH PS    Y + +   KP +LKN+  S  +   ++
Sbjct: 98  LYQNVSSCGFRDIHRPSKPRHYLAHKVMAKPGKLKNILGSNVIDVNSI 145


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 438 GNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDA 599
           G  ++   +E + ++L  M+EI + K+   V + V+    +FS     AA+ DA
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSD-SQRAATKDA 163


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 634 WK*NVRTITETRPWSRCVSSWGT 702
           WK + RT+ ET PW R +SS  T
Sbjct: 352 WKESTRTVFETVPW-RILSSQAT 373


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 306 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 208
           KS H  ++LD+   L+    T  D+T  F  NC
Sbjct: 78  KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 414 LQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETV 542
           ++ P  LFG ++E+ ++    ++     E I+N++ +  VET+
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETI 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,889
Number of Sequences: 5004
Number of extensions: 73962
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)