Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22j04
         (841 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075414-1|AAL68237.1| 1177|Drosophila melanogaster LD36407p pro...    29   6.0  
AE014296-272|AAF47505.2| 1544|Drosophila melanogaster CG12090-PA...    29   6.0  
AE014296-271|AAN11486.1| 1472|Drosophila melanogaster CG12090-PC...    29   6.0  
AE014296-270|AAN11485.1| 1471|Drosophila melanogaster CG12090-PB...    29   6.0  
AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...    29   7.9  
AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...    29   7.9  
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...    29   7.9  

>AY075414-1|AAL68237.1| 1177|Drosophila melanogaster LD36407p protein.
          Length = 1177

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 630  PVEIKCPYNYRDTTVEQMRVELGNGNRKYRVKHTALLVNKKG-TPQFEMVKNGCALQAKY 806
            PV    P   RD+   Q   E  +  R YR  H  + VN+K    ++  VK+   LQ ++
Sbjct: 875  PVTTPVPNFLRDSPAPQSWTETSSNKRVYRQSHLEIDVNQKSDRMEWGHVKHHTVLQPRF 934

Query: 807  S 809
            +
Sbjct: 935  A 935


>AE014296-272|AAF47505.2| 1544|Drosophila melanogaster CG12090-PA,
            isoform A protein.
          Length = 1544

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 630  PVEIKCPYNYRDTTVEQMRVELGNGNRKYRVKHTALLVNKKG-TPQFEMVKNGCALQAKY 806
            PV    P   RD+   Q   E  +  R YR  H  + VN+K    ++  VK+   LQ ++
Sbjct: 1242 PVTTPVPNFLRDSPAPQSWTETSSNKRVYRQSHLEIDVNQKSDRMEWGHVKHHTVLQPRF 1301

Query: 807  S 809
            +
Sbjct: 1302 A 1302


>AE014296-271|AAN11486.1| 1472|Drosophila melanogaster CG12090-PC,
            isoform C protein.
          Length = 1472

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 630  PVEIKCPYNYRDTTVEQMRVELGNGNRKYRVKHTALLVNKKG-TPQFEMVKNGCALQAKY 806
            PV    P   RD+   Q   E  +  R YR  H  + VN+K    ++  VK+   LQ ++
Sbjct: 1170 PVTTPVPNFLRDSPAPQSWTETSSNKRVYRQSHLEIDVNQKSDRMEWGHVKHHTVLQPRF 1229

Query: 807  S 809
            +
Sbjct: 1230 A 1230


>AE014296-270|AAN11485.1| 1471|Drosophila melanogaster CG12090-PB,
            isoform B protein.
          Length = 1471

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 630  PVEIKCPYNYRDTTVEQMRVELGNGNRKYRVKHTALLVNKKG-TPQFEMVKNGCALQAKY 806
            PV    P   RD+   Q   E  +  R YR  H  + VN+K    ++  VK+   LQ ++
Sbjct: 1169 PVTTPVPNFLRDSPAPQSWTETSSNKRVYRQSHLEIDVNQKSDRMEWGHVKHHTVLQPRF 1228

Query: 807  S 809
            +
Sbjct: 1229 A 1229


>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 504 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 680
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 681 MRVELGNGNRK 713
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 504 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 680
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 681 MRVELGNGNRK 713
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 504 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 680
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 681 MRVELGNGNRK 713
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,150,726
Number of Sequences: 53049
Number of extensions: 869296
Number of successful extensions: 2166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)