Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22j02
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457383-1|CAG33664.1| 387|Homo sapiens PAI-RBP1 protein. 48 4e-05
BC020555-1|AAH20555.1| 402|Homo sapiens SERPINE1 mRNA binding p... 48 4e-05
BC017449-1|AAH17449.1| 387|Homo sapiens SERPINE1 mRNA binding p... 48 4e-05
BC002488-1|AAH02488.1| 402|Homo sapiens SERPINE1 mRNA binding p... 48 4e-05
AL590559-4|CAH73325.1| 387|Homo sapiens PAI-1 mRNA-binding prot... 48 4e-05
AL590559-2|CAH73324.1| 402|Homo sapiens PAI-1 mRNA-binding prot... 48 4e-05
AK223138-1|BAD96858.1| 387|Homo sapiens PAI-1 mRNA-binding prot... 48 4e-05
AK222955-1|BAD96675.1| 387|Homo sapiens PAI-1 mRNA-binding prot... 48 4e-05
BC026916-1|AAH26916.1| 408|Homo sapiens SERPINE1 mRNA binding p... 40 0.013
BC019273-1|AAH19273.1| 408|Homo sapiens SERPINE1 mRNA binding p... 40 0.013
BC008045-1|AAH08045.1| 408|Homo sapiens SERPINE1 mRNA binding p... 40 0.013
BC003049-1|AAH03049.1| 408|Homo sapiens SERPINE1 mRNA binding p... 40 0.013
AY032853-1|AAK51130.1| 309|Homo sapiens CGI-55 protein. 40 0.013
AL590559-3|CAH73323.1| 408|Homo sapiens PAI-1 mRNA-binding prot... 40 0.013
AL590559-1|CAH73326.1| 393|Homo sapiens PAI-1 mRNA-binding prot... 40 0.013
AK074970-1|BAC11324.1| 408|Homo sapiens protein ( Homo sapiens ... 40 0.013
AF151813-1|AAD34050.1| 393|Homo sapiens CGI-55 protein protein. 40 0.013
U77327-1|AAC31117.1| 299|Homo sapiens Ki-1/57 intracellular ant... 37 0.091
AL133477-4|CAI39620.1| 413|Homo sapiens hyaluronan binding prot... 37 0.091
AF241831-1|AAF62546.1| 413|Homo sapiens intracellular hyalurona... 37 0.091
BC018788-1|AAH18788.1| 308|Homo sapiens HABP4 protein protein. 36 0.12
AL133477-5|CAI39621.1| 308|Homo sapiens hyaluronan binding prot... 36 0.12
BC048968-1|AAH48968.1| 653|Homo sapiens ANUBL1 protein protein. 35 0.28
BC045587-1|AAH45587.2| 727|Homo sapiens ANUBL1 protein protein. 35 0.28
AL445201-3|CAH72967.1| 727|Homo sapiens AN1, ubiquitin-like, ho... 35 0.28
AL445201-2|CAH72966.1| 609|Homo sapiens AN1, ubiquitin-like, ho... 35 0.28
AF311324-1|AAG33850.1| 727|Homo sapiens ubiquitin-like fusion p... 35 0.28
>CR457383-1|CAG33664.1| 387|Homo sapiens PAI-RBP1 protein.
Length = 387
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC020555-1|AAH20555.1| 402|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 402
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC017449-1|AAH17449.1| 387|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 387
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC002488-1|AAH02488.1| 402|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 402
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AL590559-4|CAH73325.1| 387|Homo sapiens PAI-1 mRNA-binding protein
(PAI-RBP1) protein.
Length = 387
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AL590559-2|CAH73324.1| 402|Homo sapiens PAI-1 mRNA-binding protein
(PAI-RBP1) protein.
Length = 402
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AK223138-1|BAD96858.1| 387|Homo sapiens PAI-1 mRNA-binding protein
variant protein.
Length = 387
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AK222955-1|BAD96675.1| 387|Homo sapiens PAI-1 mRNA-binding protein
variant protein.
Length = 387
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDKTGVKSVDKREGA 757
FD+RGKREFDR SGSD++G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSGLKHEDKRGGS 213
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC026916-1|AAH26916.1| 408|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC019273-1|AAH19273.1| 408|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC008045-1|AAH08045.1| 408|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>BC003049-1|AAH03049.1| 408|Homo sapiens SERPINE1 mRNA binding
protein 1 protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AY032853-1|AAK51130.1| 309|Homo sapiens CGI-55 protein.
Length = 309
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 101 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 135
>AL590559-3|CAH73323.1| 408|Homo sapiens PAI-1 mRNA-binding protein
(PAI-RBP1) protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AL590559-1|CAH73326.1| 393|Homo sapiens PAI-1 mRNA-binding protein
(PAI-RBP1) protein.
Length = 393
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AK074970-1|BAC11324.1| 408|Homo sapiens protein ( Homo sapiens
cDNA FLJ90489 fis, clone NT2RP3003473, moderately
similar to PAI-1 mRNA-binding protein. ).
Length = 408
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>AF151813-1|AAD34050.1| 393|Homo sapiens CGI-55 protein protein.
Length = 393
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Frame = +2
Query: 671 FDNRGKREFDRRSGSDK------TGVKSVDKREGA 757
FD+RGKREFDR SGSD+ +G+K DKR G+
Sbjct: 185 FDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGS 219
Score = 33.5 bits (73), Expect = 0.85
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKARE 253
++ +G V NR+ DDE+DP + LKA E
Sbjct: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAE 35
>U77327-1|AAC31117.1| 299|Homo sapiens Ki-1/57 intracellular
antigen protein.
Length = 299
Score = 36.7 bits (81), Expect = 0.091
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 668 SFDNRGKREFDRRSGSDKTGVKSVDKREG 754
+FD RGKREF+R G+DK V++ D G
Sbjct: 93 AFDQRGKREFERYGGNDKIAVRTEDNMGG 121
>AL133477-4|CAI39620.1| 413|Homo sapiens hyaluronan binding protein
4 protein.
Length = 413
Score = 36.7 bits (81), Expect = 0.091
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 668 SFDNRGKREFDRRSGSDKTGVKSVDKREG 754
+FD RGKREF+R G+DK V++ D G
Sbjct: 207 AFDQRGKREFERYGGNDKIAVRTEDNMGG 235
Score = 36.3 bits (80), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKAREQ 256
M+ S+G V NR+ LDDE+DP D L+ E+
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAER 47
>AF241831-1|AAF62546.1| 413|Homo sapiens intracellular
hyaluronan-binding protein protein.
Length = 413
Score = 36.7 bits (81), Expect = 0.091
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 668 SFDNRGKREFDRRSGSDKTGVKSVDKREG 754
+FD RGKREF+R G+DK V++ D G
Sbjct: 207 AFDQRGKREFERYGGNDKIAVRTEDNMGG 235
Score = 36.3 bits (80), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKAREQ 256
M+ S+G V NR+ LDDE+DP D L+ E+
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAER 47
>BC018788-1|AAH18788.1| 308|Homo sapiens HABP4 protein protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKAREQ 256
M+ S+G V NR+ LDDE+DP D L+ E+
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAER 47
>AL133477-5|CAI39621.1| 308|Homo sapiens hyaluronan binding protein
4 protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 161 MENSYGVGVVNRYALFLDDETDPLDALKAREQ 256
M+ S+G V NR+ LDDE+DP D L+ E+
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAER 47
>BC048968-1|AAH48968.1| 653|Homo sapiens ANUBL1 protein protein.
Length = 653
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 743 CRLISHRFCQSRIFGRTHVCLYCQKNAARAVPHEAHAVV 627
CR + FC S + TH C Y K+A R HEA+ VV
Sbjct: 608 CRC-GNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVV 645
>BC045587-1|AAH45587.2| 727|Homo sapiens ANUBL1 protein protein.
Length = 727
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 743 CRLISHRFCQSRIFGRTHVCLYCQKNAARAVPHEAHAVV 627
CR + FC S + TH C Y K+A R HEA+ VV
Sbjct: 682 CRC-GNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVV 719
>AL445201-3|CAH72967.1| 727|Homo sapiens AN1, ubiquitin-like,
homolog (Xenopus laevis) protein.
Length = 727
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 743 CRLISHRFCQSRIFGRTHVCLYCQKNAARAVPHEAHAVV 627
CR + FC S + TH C Y K+A R HEA+ VV
Sbjct: 682 CRC-GNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVV 719
>AL445201-2|CAH72966.1| 609|Homo sapiens AN1, ubiquitin-like,
homolog (Xenopus laevis) protein.
Length = 609
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 743 CRLISHRFCQSRIFGRTHVCLYCQKNAARAVPHEAHAVV 627
CR + FC S + TH C Y K+A R HEA+ VV
Sbjct: 564 CRC-GNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVV 601
>AF311324-1|AAG33850.1| 727|Homo sapiens ubiquitin-like fusion
protein protein.
Length = 727
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 743 CRLISHRFCQSRIFGRTHVCLYCQKNAARAVPHEAHAVV 627
CR + FC S + TH C Y K+A R HEA+ VV
Sbjct: 682 CRC-GNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVV 719
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,825,742
Number of Sequences: 237096
Number of extensions: 1676114
Number of successful extensions: 3519
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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