Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22i24
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   5.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   6.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 368 LSWWSCRCLG*CYHCSTWRCFGSDETSRRW-WIIAKVRR 255
           + W   +  G  Y C+++ CF SD+   R+ + +A VR+
Sbjct: 42  IGWEYSKSFGNAYICTSFLCFHSDDFKTRFTFPLAAVRK 80


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 HHRLLVSSLPKHLHVLQ 327
           HH + V  LPK+LH LQ
Sbjct: 258 HHEVSVGRLPKNLHPLQ 274


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 597  IYLSKNIPRSLFRNTCKLVKYFHIVLEIQVNF 692
            IY+  +IP  LF + CK   +    + +++ F
Sbjct: 2616 IYVDNDIPLKLFNDECKAQGFIEFPVALEMRF 2647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,074
Number of Sequences: 5004
Number of extensions: 59415
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)