Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22i24
(762 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein pr... 44 5e-04
BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha f... 44 5e-04
BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha f... 44 5e-04
BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-indu... 44 5e-04
BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein. 44 5e-04
AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane... 44 5e-04
>BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein
protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
>AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane
protein of lysosome/late endosome protein.
Length = 161
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 396 CQTCNKTVVTRVDYVPNNRTHXXXXXXXXXXXXXXXXFVPYCMRSCKTANHYCTQCKAFV 575
C +CNK +V+++ Y T F+P+C+ + + +HYC C+A +
Sbjct: 96 CPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALL 155
Query: 576 GAF 584
G +
Sbjct: 156 GTY 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,242,206
Number of Sequences: 237096
Number of extensions: 2043766
Number of successful extensions: 4258
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4257
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -