Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22i17
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.4  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   7.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   9.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 571  KISEYYWPIASRIVFEKNRSILLYLMDTELARYTHVRTWECQVDLSYAIIASFL 732
            K+ +Y +P+A +I+   NRS L   +   L R  H++    + ++   +++SF+
Sbjct: 2481 KLWQYIFPLAWKILSSDNRSDLSKSLIYLLTRDYHIKQVNNRPNVISTLVSSFV 2534


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 719 IIAYERSTWHSQVRTCVYRASSVSIKYNKIDRFFSKTIRE 600
           I A+  S    QV    ++ SS  +  NK+D+F + TI E
Sbjct: 426 IFAHNTSIESIQVALLSFQNSSSQVSKNKLDKFGALTISE 465


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 653 VSIKYNKIDRFFSKTIREAIGQ*YSEILRYHYSY 552
           V + +++I + FSK  ++A G+   ++++ HY +
Sbjct: 737 VELNHDRIKKIFSKRDQKAAGRDRLKLIKLHYDH 770


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 160 AHLIIHINIKDYTYFIIYVIINL*TFWSFLKVSAHFGHSHQADFCYLHYLF 312
           A LI  +  KD T++++       TFW F   + HF ++ +     +H+LF
Sbjct: 274 ASLIHALPPKDITFYLLM------TFWQFSSDNNHFYYNTKLFAAKVHHLF 318


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 561 LFV*NNFHAAFIFITSFINLKFKSCTYVLFQLEQDHS--GILF*DRNRSMTQ-NQRLIQ 394
           LFV +NF+  F  I+S +  K       LF  + DH+  G LF   +R+ T+  QR++Q
Sbjct: 386 LFVASNFYQPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYTRFGQRMLQ 444


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -2

Query: 795 RDDRWRKWCKI 763
           +DD W++WC++
Sbjct: 332 KDDSWKRWCRV 342


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 189 RLHLFYHLRHHQF 227
           RLHLF+ LRH+ F
Sbjct: 368 RLHLFFSLRHNSF 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,171
Number of Sequences: 5004
Number of extensions: 66658
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)