Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22i03
(491 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 30 5.0
U51587-1|AAB81549.1| 767|Homo sapiens Golgi complex autoantigen... 30 5.0
EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein. 30 5.0
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 30 5.0
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 30 5.0
BC032853-1|AAH32853.1| 767|Homo sapiens golgi autoantigen, golg... 30 5.0
BC001302-1|AAH01302.1| 495|Homo sapiens RAD18 homolog (S. cerev... 30 5.0
AY961989-1|AAX44049.1| 495|Homo sapiens RAD18 homolog (S. cerev... 30 5.0
AY004333-1|AAF86618.1| 495|Homo sapiens RAD18 protein. 30 5.0
AL451125-2|CAI14346.1| 767|Homo sapiens golgi autoantigen, golg... 30 5.0
AL354928-1|CAI39632.1| 767|Homo sapiens golgi autoantigen, golg... 30 5.0
AK222771-1|BAD96491.1| 495|Homo sapiens postreplication repair ... 30 5.0
AK023075-1|BAB14392.1| 495|Homo sapiens protein ( Homo sapiens ... 30 5.0
AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding... 30 5.0
AB208858-1|BAD92095.1| 400|Homo sapiens golgin 97 variant protein. 30 5.0
AB035274-1|BAA99284.1| 495|Homo sapiens postreplication repair ... 30 5.0
BC029508-1|AAH29508.1| 335|Homo sapiens coiled-coil domain cont... 29 6.6
AF273051-1|AAG34911.1| 335|Homo sapiens CTCL tumor antigen se57... 29 6.6
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 29 8.8
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 29 8.8
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 29 8.8
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 29 8.8
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 207 QSQRDLKSKLEEINRHKQKITIDSQHFEK 293
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>U51587-1|AAB81549.1| 767|Homo sapiens Golgi complex autoantigen
golgin-97 protein.
Length = 767
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 198 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 344
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>EF560737-1|ABQ59047.1| 877|Homo sapiens NEFM protein protein.
Length = 877
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 207 QSQRDLKSKLEEINRHKQKITIDSQHFEK 293
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 207 QSQRDLKSKLEEINRHKQKITIDSQHFEK 293
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 207 QSQRDLKSKLEEINRHKQKITIDSQHFEK 293
Q R+L++ LE +N K ++ +DS H E+
Sbjct: 152 QEIRELRATLEMVNHEKAQVQLDSDHLEE 180
>BC032853-1|AAH32853.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 198 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 344
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>BC001302-1|AAH01302.1| 495|Homo sapiens RAD18 homolog (S.
cerevisiae) protein.
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AY961989-1|AAX44049.1| 495|Homo sapiens RAD18 homolog (S.
cerevisiae) protein.
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AY004333-1|AAF86618.1| 495|Homo sapiens RAD18 protein.
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AL451125-2|CAI14346.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 198 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 344
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>AL354928-1|CAI39632.1| 767|Homo sapiens golgi autoantigen, golgin
subfamily a, 1 protein.
Length = 767
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 198 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 344
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 218 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 264
>AK222771-1|BAD96491.1| 495|Homo sapiens postreplication repair
protein hRAD18p variant protein.
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 RDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AK023075-1|BAB14392.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ13013 fis, clone NT2RP3000590, weakly similar to
UVS-2 PROTEIN. ).
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AF169796-1|AAF80856.1| 484|Homo sapiens zinc finger DNA binding
protein protein.
Length = 484
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>AB208858-1|BAD92095.1| 400|Homo sapiens golgin 97 variant protein.
Length = 400
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 198 NASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 344
N++Q DL KLEE+ RH T++ Q I S T +++ +E++
Sbjct: 117 NSNQMSSDLSQKLEELQRHYS--TLEEQRDHVIASKTGAESKITALEQK 163
>AB035274-1|BAA99284.1| 495|Homo sapiens postreplication repair
protein hRAD18p protein.
Length = 495
Score = 29.9 bits (64), Expect = 5.0
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 141 KRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEE----INRHKQKITIDSQHFEKI---- 296
K+ SSV+ K K S RDLK KL+E I +KQ++ Q F +
Sbjct: 229 KKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQ 288
Query: 297 ------KSLTKNVNELQNMEKRVMKSRQNFLNYGINNF 392
KS + V E++N+EK M+ + LN + F
Sbjct: 289 CDALHPKSAAEIVQEIENIEKTRMRLEASKLNESVMVF 326
>BC029508-1|AAH29508.1| 335|Homo sapiens coiled-coil domain
containing 68 protein.
Length = 335
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 228 SKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 371
+KLE+ + KQ + +Q EK++ + EL+N+ +R+ K ++ L
Sbjct: 159 NKLEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLL 206
>AF273051-1|AAG34911.1| 335|Homo sapiens CTCL tumor antigen se57-1
protein.
Length = 335
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 228 SKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 371
+KLE+ + KQ + +Q EK++ + EL+N+ +R+ K ++ L
Sbjct: 159 NKLEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLL 206
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 29.1 bits (62), Expect = 8.8
Identities = 19/78 (24%), Positives = 42/78 (53%)
Frame = +3
Query: 138 IKRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNV 317
IK+C S + +M +KN + RDL+ E+IN+ + +T+ EK+K ++
Sbjct: 512 IKQCLNQSQNFAEEMKAKNTSQETMLRDLQ---EKINQQENSLTL-----EKLKLAVADL 563
Query: 318 NELQNMEKRVMKSRQNFL 371
+ ++ + ++K R++ +
Sbjct: 564 EKQRDCSQDLLKKREHHI 581
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 29.1 bits (62), Expect = 8.8
Identities = 19/78 (24%), Positives = 42/78 (53%)
Frame = +3
Query: 138 IKRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNV 317
IK+C S + +M +KN + RDL+ E+IN+ + +T+ EK+K ++
Sbjct: 512 IKQCLNQSQNFAEEMKAKNTSQETMLRDLQ---EKINQQENSLTL-----EKLKLAVADL 563
Query: 318 NELQNMEKRVMKSRQNFL 371
+ ++ + ++K R++ +
Sbjct: 564 EKQRDCSQDLLKKREHHI 581
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.1 bits (62), Expect = 8.8
Identities = 19/78 (24%), Positives = 42/78 (53%)
Frame = +3
Query: 138 IKRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNV 317
IK+C S + +M +KN + RDL+ E+IN+ + +T+ EK+K ++
Sbjct: 512 IKQCLNQSQNFAEEMKAKNTSQETMLRDLQ---EKINQQENSLTL-----EKLKLAVADL 563
Query: 318 NELQNMEKRVMKSRQNFL 371
+ ++ + ++K R++ +
Sbjct: 564 EKQRDCSQDLLKKREHHI 581
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.1 bits (62), Expect = 8.8
Identities = 19/78 (24%), Positives = 42/78 (53%)
Frame = +3
Query: 138 IKRCCFTSSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNV 317
IK+C S + +M +KN + RDL+ E+IN+ + +T+ EK+K ++
Sbjct: 512 IKQCLNQSQNFAEEMKAKNTSQETMLRDLQ---EKINQQENSLTL-----EKLKLAVADL 563
Query: 318 NELQNMEKRVMKSRQNFL 371
+ ++ + ++K R++ +
Sbjct: 564 EKQRDCSQDLLKKREHHI 581
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,912,455
Number of Sequences: 237096
Number of extensions: 1061858
Number of successful extensions: 2368
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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