Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h21
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   1.9  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    27   3.4  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   5.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 588 RNKLRILVEGDDPPPPIRTFQHMKFPKGILR 680
           R +  I+V G + P P+ TF+   FP  +L+
Sbjct: 105 RKEKEIVVHGLNVPKPVTTFEEAGFPNYVLK 135


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 582 MIRNKLRILVEGDDPPPPIRTFQHMKFPKGILRGL 686
           +++    I ++GDD P P+R ++    P  +L+ L
Sbjct: 230 ILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVL 264


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 664 GNFMCWKVLIGGGGSSPSTNILNLFLIISCLV 569
           G F+C   ++GG   +P     NL  II C V
Sbjct: 64  GIFICGTSILGGAVKAPRIKTKNLISIIFCEV 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,235
Number of Sequences: 5004
Number of extensions: 49451
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)