Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h18
         (757 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   294   7e-80
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   294   7e-80
X76210-1|CAA53803.1|  389|Drosophila melanogaster homeotic ultra...    30   3.9  
X05723-1|CAA29194.1|  389|Drosophila melanogaster Ultrabithorax ...    30   3.9  
U31961-11|AAA84408.1|  380|Drosophila melanogaster UBXIA protein.      30   3.9  
U31961-9|AAA84412.1|  389|Drosophila melanogaster UBXIB protein.       30   3.9  
BT010241-1|AAQ23559.1|  380|Drosophila melanogaster RE43738p pro...    30   3.9  
AE014297-2261|AAF55355.2|  389|Drosophila melanogaster CG10388-P...    30   3.9  
AE014297-2258|AAN13718.1|  380|Drosophila melanogaster CG10388-P...    30   3.9  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  294 bits (722), Expect = 7e-80
 Identities = 138/204 (67%), Positives = 154/204 (75%)
 Frame = +1

Query: 58  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 237
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 238 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 417
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 418 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 597
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 598 SQTKGGSRRAAWLGRNTLQLRRKR 669
           SQT GGSRRAAW  +N   + RKR
Sbjct: 181 SQTIGGSRRAAWKRKNREHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  294 bits (722), Expect = 7e-80
 Identities = 138/204 (67%), Positives = 154/204 (75%)
 Frame = +1

Query: 58  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 237
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 238 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 417
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 418 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 597
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 598 SQTKGGSRRAAWLGRNTLQLRRKR 669
           SQT GGSRRAAW  +N   + RKR
Sbjct: 181 SQTIGGSRRAAWKRKNREHMHRKR 204


>X76210-1|CAA53803.1|  389|Drosophila melanogaster homeotic
           ultrabithorax protein protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 300


>X05723-1|CAA29194.1|  389|Drosophila melanogaster Ultrabithorax
           gene product protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 300


>U31961-11|AAA84408.1|  380|Drosophila melanogaster UBXIA protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 291


>U31961-9|AAA84412.1|  389|Drosophila melanogaster UBXIB protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 300


>BT010241-1|AAQ23559.1|  380|Drosophila melanogaster RE43738p
           protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 291


>AE014297-2261|AAF55355.2|  389|Drosophila melanogaster CG10388-PA,
           isoform A protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 300


>AE014297-2258|AAN13718.1|  380|Drosophila melanogaster CG10388-PE,
           isoform E protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLGRNTLQLRRKR 669
           LT  G  S  +GK  RYS++  GS    WLG N L+ R ++
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQ 291


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,002,555
Number of Sequences: 53049
Number of extensions: 787983
Number of successful extensions: 2364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)