Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22h17
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 29 0.77
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 1.0
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.3
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 27 3.1
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 4.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 27 4.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 5.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 5.4
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 7.2
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 9.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 9.5
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 234 VNTLKRMADIDFNKPVEVEVTIINDEEIEFVSNWVTDYKIDNISNNFPIENNTVLTKGN 410
VN+ R D N + + T ++ + N+ K+D+I P+ NN VL +G+
Sbjct: 474 VNSTLRSLCKDINDLIRLSGTCTVEDPNGDLYNFNGSMKLDSIQGEIPLSNNDVLYRGS 532
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 73 FSELNNIIVLCKNYILKVKINKTERCI 153
FS L ++I+LC +L+ K N +RCI
Sbjct: 38 FSSLLSVILLCIFTLLRTKFNTYDRCI 64
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 243 LKRMADIDFNKPVEVEVTIINDEEIEFVSNWVTDYKIDNISNNFPIENNT 392
L+R + ++ PV +EV + +++ + S + T+ N NN P+ +NT
Sbjct: 220 LQRQSADSYSTPVCIEVDSEDWKDLVWKSQYATENANTNSINNSPLSSNT 269
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 267 FNKPVEVEVTIIND--EEIEFVSNWVTDYK 350
FN + T+ +D E++ F S W+TDYK
Sbjct: 801 FNSAISENPTLKSDRSEKVAFYSAWITDYK 830
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 441 EECISFDRNKDIAWTNKSLSKYINQHCELTNNIQLRDMVDSVS---SNLIKMIKKLNQWY 611
++ S N++ N S +N+ +L N ++L + + + L K+I+K+N+
Sbjct: 13 QDAYSVRENENELHINNSGMSELNKKLQLPN-VELSTLSHTQEQEFNELNKLIRKINELQ 71
Query: 612 QQKIYEDYPKNITNS 656
+ + ED K +TN+
Sbjct: 72 EFYLLEDLAKPVTNA 86
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/60 (20%), Positives = 30/60 (50%)
Frame = +3
Query: 213 CKITMESVNTLKRMADIDFNKPVEVEVTIINDEEIEFVSNWVTDYKIDNISNNFPIENNT 392
CK + S +++ + + ID++ + +T + FVS + +++N F + ++T
Sbjct: 116 CKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRARFVSKDTKSFSYSSLANTFSLISST 175
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 575 ITRDRVDHIA-QLNVVCQFTMLVNIF**TFICPR-YIFISVKRYAFFSWEWISFMCIIAL 402
+ R+R+D L+ + T+L + F P Y+F YA F+ +S M +A+
Sbjct: 470 VLRNRIDSYEYDLDQLLLGTILFTVL--IFFLPTIYVF-----YAAFALTRVSVMTCLAI 522
Query: 401 CENSIIFNGKII*YIVYFIICDPVR 327
CE + F ++ I DP R
Sbjct: 523 CETMLAFLNHFPLFVTMLRIKDPYR 547
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 576 LIKMIKKLNQWYQQKIYEDYPK 641
+++ I++L Y+Q +YE+YP+
Sbjct: 303 VLRKIQQLKDSYEQSLYEEYPQ 324
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 507 INQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYF 686
+N + + I L M+ + LIK + +K E YP I N N+ Y
Sbjct: 1706 VNINSDDIAQISLTPMMVTDVHRLIKFYLTNQENNIEKRPEGYPYVILNQTGYNLSIQYG 1765
Query: 687 NLSYNAVTNIILPLSK 734
NL+ + + ++ LP K
Sbjct: 1766 NLNSSEMQSLSLPSGK 1781
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 555 VDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYFNLSYNAVTNIILPLSK 734
+D V+SN + + L + K+ E P N+ +Y+N F S A + S
Sbjct: 354 IDKVTSNDLYLDNNLQSHF--KVTESQPTNLGRKEYSNSPF-----SIRARKDAATTSSS 406
Query: 735 TENF-NESFIERTFEIAKATKL 797
E++ N I+ + KAT L
Sbjct: 407 FESYHNTQTIQSPMKFTKATPL 428
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 126 HFQNIIFTQHNNIIKFTKISFLHTSQTC 43
HFQ+I H N ++F K+ L + + C
Sbjct: 228 HFQHIGINVHTNSLEFKKVEKLPSGELC 255
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 678 YYFNLSYNA--VTNIILPLSKTENFNESFIERTFEIAKATK 794
Y+ N + N +TN + L EN NESF E+ + K K
Sbjct: 417 YFHNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKHNK 457
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 408 NYAHERNPFPREECISFDRNKDIAWTNKSLSKYINQHC 521
NY++E ++E + D++K A KY+ HC
Sbjct: 674 NYSNETITLKKDEIV-LDKSKSYACCTSESHKYVQGHC 710
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 618 KIYEDYPKNITNSQYTN---IKFYYFNLSYNAVTNIILPLSKTENFNESFIERTFE 776
++YED + Y + IKF + Y + L L ++ FN+S++++ F+
Sbjct: 804 QLYEDNELTDALNNYLDLFGIKFAFILYDYFVENGMALELLNSDRFNKSYLKQFFK 859
>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 264 DFNKPVEVEVTIINDEEIEFVSNWVTDYKIDNISNNFPIENNTVLTKGNYAHERNPFP 437
DF V V I E I + N + + N+ NN P E ++ G +H PFP
Sbjct: 36 DFENWTVVPVETI--EGINYYPNCLPESVQRNLINNVPKELLSIYGSGKQSHLYIPFP 91
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 612 QQKIYEDYPKNITNSQYTN 668
+ +I E P+NIT+SQY N
Sbjct: 554 ENQIQEPEPENITSSQYPN 572
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 100 LCKNYILKVKINKTERCIK 156
+CK+Y+LKV K E+ +K
Sbjct: 83 ICKSYVLKVAEEKIEKLLK 101
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 507 YILINFYLSTLYLYFCQTICILLLGMDFFHVHN 409
Y F S L++YF T+ ILL+ FH N
Sbjct: 51 YYFEGFSHSLLFVYFFLTLIILLVSFMGFHYLN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,973
Number of Sequences: 5004
Number of extensions: 70538
Number of successful extensions: 248
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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