Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h17
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    29   4.3  
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538     29   5.7  
04_04_0261 + 24007790-24009098,24009191-24011118                       29   5.7  
11_06_0091 + 19967390-19969825                                         28   9.9  
08_02_0482 - 17643603-17643955,17644024-17646604                       28   9.9  
06_01_0223 - 1709897-1709912,1710188-1712520                           28   9.9  

>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 444 ECISFDRNKDIAWTNKSLSKYINQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQ 605
           E IS  +N D +   +S+ + I   CE   N QL DMVD  S+++I   +++ Q
Sbjct: 628 EIISGRKNIDFSQPEESV-QLIKLLCEKAQNNQLIDMVDKHSNDMISRQEEVIQ 680


>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
          Length = 327

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = +3

Query: 546 RDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYFNLSYNAVTNIILP 725
           RD++D+   ++ ++++KL+   + K YED  ++I +    ++K  Y  L      ++ + 
Sbjct: 114 RDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKKNYPGLRKKKEKSLAIE 173

Query: 726 LSKTE 740
             +T+
Sbjct: 174 TPRTQ 178


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 636 PKNITNSQYTNIKFYYFNLSYNAVTNIILPLS 731
           P  I  +Q  NI  + FNLS N  TN+ LPL+
Sbjct: 616 PDWIWANQNENIDVFKFNLSRNRFTNMELPLA 647


>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 612 QQKIYEDYPKNITNSQYTNIKFYYFNLSYNAVTNIILPLSKTENFNE 752
           + K+Y + P  ++N  Y +    Y NLSYN +T  +   S+ +  N+
Sbjct: 672 KNKLYGEIPVGLSNLTYLS----YLNLSYNNLTGRVPSGSQLDTLND 714


>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 657 QYTNIKFYYFNLSYNAVTNIILPLSKTENFNESFI 761
           Q  N+K    NLS N +  ++ PL   E + +SF+
Sbjct: 548 QLENLKLSLLNLSNNRLAGVLPPLFAGEMYKDSFL 582


>06_01_0223 - 1709897-1709912,1710188-1712520
          Length = 782

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = +3

Query: 441 EECISFDRNKDIAWTNKSLSKYINQHCELTNNIQL----RDMVDSVSSNLIKMIKKLNQW 608
           E  IS+  +K     N S+ ++IN     T++++     R+++D+   ++ + +KKL+Q 
Sbjct: 263 ENYISYQNSKG----NTSI-RFINYKPRTTDDLETEASDRNIIDNRRHSVSEFMKKLDQE 317

Query: 609 YQQKIYEDYPKNITNSQYTNIK 674
            + K YE+  K I      +IK
Sbjct: 318 SEIKYYENKLKEINEEYNKSIK 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,898
Number of Sequences: 37544
Number of extensions: 327938
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)