Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h17
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    31   0.96 
Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    30   2.2  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine rec...    28   8.9  
AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine re...    28   8.9  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = +3

Query: 246 KRMADIDFNK------PVEVEV--TIINDEEIEFVSNWVTDYKIDNISNNFPIEN 386
           K +A +D++K      P  V +  T+++ E +EF S W++DY ++++     +++
Sbjct: 223 KYVATVDYHKANPDTLPTNVVIHNTLVDIENVEFDSTWLSDYPVEHVRRYLSVQH 277


>Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical
           protein C15H11.5 protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 501 KYINQHCEL-TNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYP 638
           KYI +H ++   +  L   +D V+S+ I+  K++   YQ++I+EDYP
Sbjct: 156 KYIKEHNQMHLLHSFLVPQIDRVNSSHIQYDKEMK--YQRQIFEDYP 200


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 216 KITMESVNTLKRMADIDFNKPVEVEVTIINDEEIEFVSNWVTDYKI---DNISNNFPIEN 386
           K+   ++ +L   +  DFN      ++IIN+  +E V      Y I   ++I N F I N
Sbjct: 94  KVENSNLTSLSFFSSYDFNFCYYTGISIINNSLLEHVDILKKAYYIRANEDIENVFQIMN 153

Query: 387 NTVLTKGNYAHERN 428
           NT L      +  N
Sbjct: 154 NTKLDASKLCNRGN 167


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 363 SNNFPIENNTVLTKGNYAHERNPFPREECISFD 461
           SN +P+ NN ++T GN+ ++   +   + IS D
Sbjct: 204 SNFYPVPNNGIITTGNWTNQHTFYMATKPISID 236


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 363 SNNFPIENNTVLTKGNYAHERNPFPREECISFD 461
           SN +P+ NN ++T GN+ ++   +   + IS D
Sbjct: 168 SNFYPVPNNGIITTGNWTNQHTFYMATKPISID 200


>Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical
           protein Y49E10.20 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 612 QQKIYEDYPKNITNSQYTNIKFYYFNLSYNAVT 710
           Q+K+Y  +  N T   Y N K Y+FN + +  T
Sbjct: 108 QEKVYHRFADNDTRVFYKNQKLYHFNKNASCPT 140


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 491 FICPRYIFISVKRYAFFSWEWISFMCIIALCENSIIFNGKII*YIVYFIICDPVRNKFNL 312
           F  P  + I + +   F W+W S     A+C   ++FN  I   +V  I+   +R K+ L
Sbjct: 265 FFAPTPLLIIISQ---FVWQWSSG----AICLAYLVFNRTIRNLVVKMILPKKIRLKYGL 317

Query: 311 FI 306
           +I
Sbjct: 318 YI 319


>AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical
           protein Y4C6B.4b protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 428 ISFMCIIALCENSIIFN 378
           +SFMC++++C N II N
Sbjct: 16  LSFMCLVSVCSNYIIIN 32


>AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical
           protein Y4C6B.4a protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 428 ISFMCIIALCENSIIFN 378
           +SFMC++++C N II N
Sbjct: 16  LSFMCLVSVCSNYIIIN 32


>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +3

Query: 312 EIEFVSNWVTDYKIDNISNNFPIENNTV--LTKGNYAHERNP--FPREECISFDRNKDIA 479
           +I+   NW+  +K+D         N T   L K  Y  E     F  E  + FD    +A
Sbjct: 133 DIQKHRNWLNLFKVDEYDYMLQYANGTEAPLIKPQYKDEAENVIFGEEVELKFD----LA 188

Query: 480 WTNKSLSKYINQ 515
            TN SL KY N+
Sbjct: 189 QTNHSLLKYANE 200


>U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein234 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 207 IKIINMTGTNYIILIPNFYTPFCFVYFHFQNIIFTQHNNIIKF 79
           I +I  +   +++ I        FVYFH QN     HNN+I F
Sbjct: 236 IALIVQSSVTFVLFIVPVQCIVTFVYFHHQNQF---HNNLIFF 275


>AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine
           receptor, class w protein2 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 201 IINMTGTNYIILIPNFYTPFCFVYFHFQNIIFTQHNNIIKFTKISFLHTSQT 46
           I+ MT +++++ +PN ++ F F +F    +I T    I+ F +I  +  S T
Sbjct: 275 ILFMTISSFLLEVPNGFSHFAFGFFTTSPLIKTASYLIMVFAEIFPVTNSST 326


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = +3

Query: 480 WTNKSLSKYINQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQ 659
           ++NKSL   +NQ  E+   I  +D+ +  +      +K+L      K +++Y    + + 
Sbjct: 99  FSNKSLDSILNQDSEIVGGISQKDLNELRNRGPNMTVKQL----LAKNFKNYKVRQSLTS 154

Query: 660 YTNIKFYYFNLSYNAVTNIILPLSKTENFNESFIE--RTFEIAKAT 791
               +F    LS N V    L +   E+  ES ++  +T+  A A+
Sbjct: 155 ELATEFVNRTLSENDVPMGALIMPPMEDVQESIVKESKTYNYAAAS 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,876
Number of Sequences: 27780
Number of extensions: 382802
Number of successful extensions: 1255
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)