Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h11
         (779 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY032876-1|AAK66819.2|  725|Homo sapiens protein kinase NYD-SP24...    33   0.87 
BC033777-1|AAH33777.1|  725|Homo sapiens amyotrophic lateral scl...    32   2.0  
AF454946-1|AAL62330.1|  725|Homo sapiens calcium-response factor...    32   2.0  
AC010900-3|AAY24288.1|  725|Homo sapiens unknown protein.              32   2.0  
AB053309-1|BAB69018.1|  718|Homo sapiens ALS2CR8 protein.              32   2.0  
U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation fact...    30   8.1  
BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation fa...    30   8.1  
AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage stim...    30   8.1  

>AY032876-1|AAK66819.2|  725|Homo sapiens protein kinase NYD-SP24
           protein.
          Length = 725

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 28/130 (21%), Positives = 56/130 (43%)
 Frame = +2

Query: 200 EVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQT 379
           E +  S+W     P P  P T   +KS+++   Y  +  V+    +  ++ ++       
Sbjct: 238 EQQTQSVWGTRQSPSPAKPATRLMWKSQYVP--YDGIPFVNAGSRAVVMECQYGPRRKGF 295

Query: 380 LLIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKE 559
            L    E   R  +L    K T    I +   +   PEY++P    + + K ++  ++K 
Sbjct: 296 QLKKVSEQESRSCQL---YKATCPARI-YIKKVQKFPEYRVPTDPKIDK-KIIRMEQEKA 350

Query: 560 KNLMLKNVID 589
            N++ KN++D
Sbjct: 351 FNMLKKNLVD 360


>BC033777-1|AAH33777.1|  725|Homo sapiens amyotrophic lateral
           sclerosis 2 (juvenile) chromosome region, candidate 8
           protein.
          Length = 725

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 27/128 (21%), Positives = 55/128 (42%)
 Frame = +2

Query: 206 KNNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQTLL 385
           +  S+W     P P  P T   +KS+++   Y  +  V+    +  ++ ++        L
Sbjct: 240 QTQSVWGTRQSPSPAKPATRLMWKSQYVP--YDGIPFVNAGSRAVVMECQYGPRRKGFQL 297

Query: 386 IDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKN 565
               E   R  +L    K T    I +   +   PEY++P    + + K ++  ++K  N
Sbjct: 298 KKVSEQESRSCQL---YKATCPARI-YIKKVQKFPEYRVPTDPKIDK-KIIRMEQEKAFN 352

Query: 566 LMLKNVID 589
           ++ KN++D
Sbjct: 353 MLKKNLVD 360


>AF454946-1|AAL62330.1|  725|Homo sapiens calcium-response factor
           CaRF protein.
          Length = 725

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 27/128 (21%), Positives = 55/128 (42%)
 Frame = +2

Query: 206 KNNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQTLL 385
           +  S+W     P P  P T   +KS+++   Y  +  V+    +  ++ ++        L
Sbjct: 240 QTQSVWGTRQSPSPAKPATRLMWKSQYVP--YDGIPFVNAGSRAVVMECQYGPRRKGFQL 297

Query: 386 IDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKN 565
               E   R  +L    K T    I +   +   PEY++P    + + K ++  ++K  N
Sbjct: 298 KKVSEQESRSCQL---YKATCPARI-YIKKVQKFPEYRVPTDPKIDK-KIIRMEQEKAFN 352

Query: 566 LMLKNVID 589
           ++ KN++D
Sbjct: 353 MLKKNLVD 360


>AC010900-3|AAY24288.1|  725|Homo sapiens unknown protein.
          Length = 725

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 27/128 (21%), Positives = 55/128 (42%)
 Frame = +2

Query: 206 KNNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQTLL 385
           +  S+W     P P  P T   +KS+++   Y  +  V+    +  ++ ++        L
Sbjct: 240 QTQSVWGTRQSPSPAKPATRLMWKSQYVP--YDGIPFVNAGSRAVVMECQYGPRRKGFQL 297

Query: 386 IDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKN 565
               E   R  +L    K T    I +   +   PEY++P    + + K ++  ++K  N
Sbjct: 298 KKVSEQESRSCQL---YKATCPARI-YIKKVQKFPEYRVPTDPKIDK-KIIRMEQEKAFN 352

Query: 566 LMLKNVID 589
           ++ KN++D
Sbjct: 353 MLKKNLVD 360


>AB053309-1|BAB69018.1|  718|Homo sapiens ALS2CR8 protein.
          Length = 718

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 27/128 (21%), Positives = 55/128 (42%)
 Frame = +2

Query: 206 KNNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQTLL 385
           +  S+W     P P  P T   +KS+++   Y  +  V+    +  ++ ++        L
Sbjct: 240 QTQSVWGTRQSPSPAKPATRLMWKSQYVP--YDGIPFVNAGSRAVVMECQYGPRRKGFQL 297

Query: 386 IDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKN 565
               E   R  +L    K T    I +   +   PEY++P    + + K ++  ++K  N
Sbjct: 298 KKVSEQESRSCQL---YKATCPARI-YIKKVQKFPEYRVPTDPKIDK-KIIRMEQEKAFN 352

Query: 566 LMLKNVID 589
           ++ KN++D
Sbjct: 353 MLKKNLVD 360


>U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation factor
           77kDa subunit protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 68  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 127 DFALDKIGMEIMSYQIWVDY 146


>BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 3, 77kDa protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 68  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 127 DFALDKIGMEIMSYQIWVDY 146


>AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage
           stimulation factor, 3' pre-RNA, subunit 3, 77kD)
           protein.
          Length = 708

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +2

Query: 119 WKIKIQSTPRFESVFDLATDRQRCTPDEVKNNSLWSKYMFPKPFAPTTLKSYKSRFIKIV 298
           WK+ I++  + ++   +    QRC   +V +  LW  Y+         L SYK +  +  
Sbjct: 59  WKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 117

Query: 299 YCSVDDVHLEDMSYSLDMEF 358
             ++D + +E MSY + +++
Sbjct: 118 DFALDKIGMEIMSYQIWVDY 137


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,996,096
Number of Sequences: 237096
Number of extensions: 2191656
Number of successful extensions: 4291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4291
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)