Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22h11
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.60 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 551 KKEKNLMLKNVIDTIL 598
           K E N+M+KNV+D +L
Sbjct: 59  KNEVNIMMKNVVDIVL 74


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 341 SLDMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRM 511
           S  M+F+S  + T      ++C  M+E  S T + L    N    ++  PE ++P++
Sbjct: 131 SCAMKFESYPHDT------QICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQL 181



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 209 NNSLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDM 352
           N  L+ K+  PK     T+      +  +   S+D ++ E M+Y  D+
Sbjct: 13  NPKLYDKHRAPKFLGQPTIV-----YFHVTVLSIDSINEESMTYVADI 55


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 416 LELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNI-RKKEK 562
           + L S  +E     INF     + P YK PR    PR  + ++  R KE+
Sbjct: 133 VSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +2

Query: 347 DMEFDSIENQTLLIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEY 496
           D+++++ E  + LI+  ++       R    E+ +  +NFY N  ++ ++
Sbjct: 269 DLKYNTWEPISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKF 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,432
Number of Sequences: 438
Number of extensions: 4750
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)