Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22h06
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0574 - 18867623-18868033,18869751-18870209 30 2.4
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416... 29 4.1
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.5
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 5.5
01_05_0733 - 24707753-24707819,24708906-24709723 29 5.5
02_01_0775 + 5775949-5777385 28 7.2
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 28 9.6
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889... 28 9.6
04_01_0034 - 401208-402923 28 9.6
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 9.6
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 536 GPGRRLVPFH-NHNARGVYEHYHCAKRNAALRRSCG 640
GP R L +H N N GVY H C K A R G
Sbjct: 179 GPDRELWCYHTNINGEGVYLHVACVKHLAGKRWQAG 214
>11_01_0530 -
4164590-4165264,4165378-4165467,4167482-4168011,
4168094-4168603,4172207-4172432
Length = 676
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 767 ISAQHLTVRVGHTHA--HRVACRPVPAHRVDGRGQIQAEPVTREGRSFVVML 618
+SA H+ R+GH H ++ P A DGRG+ +G + V+ L
Sbjct: 302 LSAIHVAARMGHHHVVEELISAWPDAAELRDGRGRTFLHAAAEKGHAPVISL 353
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 129 FVDFDPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFK 260
+VD P++ F IN D +DD V + Q L+N +++FK
Sbjct: 221 YVDNTSDPYN-FGINRSDDEDDDYAVFHSDSKTQHLQNSDEYFK 263
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 141 DPLPFDAFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRN 320
+ L D F IN D T I+ QNN EL + + + +++ S +V+P +
Sbjct: 606 ESLLIDCFSINLGDFTVPSPILEAIQNNPLELNKYREPIMDFITH--SSAIGLLVDPKSD 663
Query: 321 WNDNTVFDNL 350
N N V + L
Sbjct: 664 SNMNKVVEQL 673
>01_05_0733 - 24707753-24707819,24708906-24709723
Length = 294
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 126 VFVDFDPLPFDAFDINTFDITNDDSIVAFQQ 218
V + D L D F INTFD D++VAF++
Sbjct: 201 VELGLDYLLADGFLINTFDAMEHDTLVAFKE 231
>02_01_0775 + 5775949-5777385
Length = 478
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 593 HYHCAKRNAA-LRRSCGPHALLARPVSAHGRQLDGL-APDGRQLDA 724
H + A+ AA L R+ G H L+ VSAH R L APD DA
Sbjct: 16 HINPARALAARLARATGAHVTLSVAVSAHRRMFPSLAAPDEEVHDA 61
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +3
Query: 225 IQELENFEQWFKNNLS-------YSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSV 368
++E+EN E K LS Y+++ ++K + R + VF+ L P S+
Sbjct: 1716 LREMENLELQTKKELSSLSLEWSYAYADSSDKYASSERGMQNRAVFEKLQPHDSL 1770
>04_04_0408 +
24987218-24987760,24988406-24988534,24988617-24988952,
24990321-24990551
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +2
Query: 512 AAAPTSALGPGRRLVPFHNHNARGVYEHYHCAKRNAALRRS 634
AAA +A GP RR P GV H KR RRS
Sbjct: 15 AAAAAAANGPHRRAAPAAGGGGGGVAIDVHGLKRRGGGRRS 55
>04_01_0034 - 401208-402923
Length = 571
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 491 LQQIARSAAAPTSALGPGRRLVPFHNHNARGVYEHYHCAKRNA 619
+++I R A + + NA V+ H+HC K NA
Sbjct: 230 VREIVRQARETVTNRKSKKNAAAIGKENASPVHHHHHCGKENA 272
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 509 SAAAPTSALGPGRRLVPFHNHNARGVYEHYHCAKRNAALRR-SCGPHALLARPVSAH 676
S+ P S++ P P H+ + H+H + + +R S P A PVS H
Sbjct: 141 SSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAEPVSHH 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,078,860
Number of Sequences: 37544
Number of extensions: 408043
Number of successful extensions: 1482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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