Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22h02
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 142 7e-35
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.58
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 29 0.77
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 4.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.5
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 7.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 9.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.5
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 142 bits (343), Expect = 7e-35
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Frame = +2
Query: 143 GDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDI 319
GDE+ SD Y +K VD+++YE ++VT QG D+ I G NPSAE+A+E + E+ ++
Sbjct: 10 GDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNL 68
Query: 320 VLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFK 499
V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N +K IL FK
Sbjct: 69 VYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFK 126
Query: 500 ELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 631
+ F+ GESMD D MV +M YR+ DG P M+FFK GL EKF
Sbjct: 127 DYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 311 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 457
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 672 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 559
AS ELL+ NFS+ R CL+N ++ CVP +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 218 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 361
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 587 VFAYHQSLYIPSWQPC-HHN 531
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 128 HFVENMITSDNVLIDLHFDGLEAIKNNKNRKNGF 27
H +++ T + LI + +E+IK KNR +GF
Sbjct: 506 HISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 15 LLR-REAVLSVFIIFNRLQSIKMKIYKDIITGNHIFYEMLLLILVM 149
LLR RE ++ F+ ++ MK Y+D++ H F++ + L VM
Sbjct: 154 LLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVM 199
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 511 ELKFLKPAEDVFHYFVHVCFKYFNLVR 431
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 795 LLXYAVYFLNTKLFSLVMREASSCQD 718
+L Y++ LNT L S ++ +CQD
Sbjct: 826 ILAYSIIMLNTDLHSPQVKNRMTCQD 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,819
Number of Sequences: 5004
Number of extensions: 67159
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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