Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22g24
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 631 HHVPHDTERYEPHYVEWNTSHEVN 560
           HH   DTE+     +E + S EVN
Sbjct: 66  HHCNQDTEKLNQLEIESDNSKEVN 89


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 270 DHRLDSYHVRYHR-AKLLLAKHFLLYTIEIYLPFLKSL*TTDTIFLN 133
           D  LD Y  ++    +L   K   + T+ +   F+K++   DT F+N
Sbjct: 56  DFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 270 DHRLDSYHVRYHR-AKLLLAKHFLLYTIEIYLPFLKSL*TTDTIFLN 133
           D  LD Y  ++    +L   K   + T+ +   F+K++   DT F+N
Sbjct: 56  DFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 221 YLQSISFSTPLKYIFHFLNRFKQRTRFF 138
           +L  IS S PL YIF   N+F+  +  F
Sbjct: 170 FLDLIS-SIPLDYIFLIFNQFQDFSESF 196


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 221 YLQSISFSTPLKYIFHFLNRFKQRTRFF 138
           +L  IS S PL YIF   N+F+  +  F
Sbjct: 170 FLDLIS-SIPLDYIFLIFNQFQDFSESF 196


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 221 YLQSISFSTPLKYIFHFLNRFKQRTRFF 138
           +L  IS S PL YIF   N+F+  +  F
Sbjct: 170 FLDLIS-SIPLDYIFLIFNQFQDFSESF 196


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 434 QEVKLVKKEYFNCWYSLTPY 493
           Q   L+ +    CW SL PY
Sbjct: 328 QFFNLIDQNAVGCWNSLLPY 347


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 574 WYSIQRNEVHNVLCRGEHGVF 636
           WY I RN  + +  R + G+F
Sbjct: 282 WYWIDRNSAYKIDQRIQKGLF 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,404
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)