Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22g22
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 29 0.70
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 28 1.2
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 2.1
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.8
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 3.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 3.8
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 5.0
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 6.6
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.7
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 8.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.7
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 8.7
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 8.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 8.7
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 523 KKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMV 636
+K KEID Y+R S++ A Y N + P E M+
Sbjct: 36 QKQKEIDENYHRQESLIESAKIAYLNTKNTPPKEDSML 73
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 732 LNIAGMSGFKFYIALVSIICFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMM 574
LN + +KF I +V ++CF + + +FD H++F + H+ +V G +
Sbjct: 274 LNASFDGSYKFPIPIV-LLCFFLYSLLTPFFDIHLQF-QLIVMHMSIVQVGFI 324
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 412 TNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 552
T +S + SV + ++KES ++ Y++ F+N ++ KEI +Y
Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -3
Query: 171 INNYSITDNVIIYHYS--LNHLNFW 103
+N+Y +T V++Y+YS N+ +FW
Sbjct: 1 MNSYVLTSQVLVYNYSKRKNYWHFW 25
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 222 IRILIWAIHFALKIFQIINNYSITD 148
+ +L+W +F ++F I+ YS+ D
Sbjct: 41 VSLLVWNFYFGYRVFYRISKYSLID 65
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 529 MKEIDPYYNRYSSMVHHAGSHYDNVRINKPDE 624
+KE+ P+++ S+ + G D+ I+K DE
Sbjct: 96 LKELKPFHSTLSAFTNETGGIIDDTIISKQDE 127
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 415 NLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHH 579
NL+ +AD+S + ++L+ +LH +L+ + NL + + D N+ S H
Sbjct: 460 NLQREIADLSEQIVELESKRNDLHSALLE-MGGNLTSLLTKKDSIANKISDQSEH 513
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 254 TFWEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAKKGLA 385
T E ++ H N SVR++N R + S++ L+S G A
Sbjct: 840 TILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGKA 883
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 NSPNQNTNNTESLLRSIIN 255
N+PN + N ++LRSIIN
Sbjct: 400 NAPNYDLTNAHAVLRSIIN 418
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 260 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAK 373
WE+ Q + SV KN+ KRKR + L + K
Sbjct: 27 WERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 323 RKRASIETAGLQSRN-AKKGLATKYLTIQKLLI 418
R R SIETAGL SR+ A +A L ++ L +
Sbjct: 140 RTRLSIETAGLTSRSLAINNVANNSLKVKPLTL 172
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 373 EGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMK 534
E +S+ VP++P+ +N ++ I++ E E ++V DT++ LHK K
Sbjct: 128 ETVSENVPHSPQSSN-------DAIPVIKITE---ENSFRVKDTLYVGLHKDQK 171
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 346 SRAPESKCKEGISDKVPYNPKITNLES 426
S P +EGI D +P NP N+ S
Sbjct: 609 SDLPPDSVREGIKDVLPINPHTGNIYS 635
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 343 NSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLH 522
+S P+S+ E S P+IT+L R +L ++ H L +F N+H
Sbjct: 91 SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150
Query: 523 KKMK 534
++++
Sbjct: 151 RELE 154
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 352 APESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVL 498
+P + GIS Y P + L+S L DI ++ ++ES E+ +L
Sbjct: 26 SPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSML 74
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +1
Query: 493 VLDTIFQNLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHEK 672
+L TI NL + + D +S G H V K + +D+V P FH
Sbjct: 1034 LLSTISSNLVESLS-FDKIREEVTSYKAPDGLHDFGVYSLKDEYYDLVD----PYYFHYN 1088
Query: 673 TNNRNESDIKFEPRHA 720
N R ESD + R A
Sbjct: 1089 KNEREESDTILKKRLA 1104
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +1
Query: 430 LADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDP-------YYNRYSSMVHHAGS 588
L D S Y + K + + D+ QN+ + +KEI P N S+ V+ A
Sbjct: 38 LHDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASH 97
Query: 589 HYDNVRINKPDEFDMVIEIGVP 654
D+ ++K + M + +P
Sbjct: 98 DLDSKDVDKQHQRKMFPGLSIP 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,835
Number of Sequences: 5004
Number of extensions: 55812
Number of successful extensions: 185
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -