Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22g12
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    29   0.51 
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.6  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.8  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   6.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 510 FGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYAC-MMMFFLANMIEGQLISSGAF 686
           F    +++ I +G+ IF+WL         W     LYA   ++ F    + G ++S+   
Sbjct: 311 FSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVL 370

Query: 687 EISLNN 704
           +I+ ++
Sbjct: 371 DIAFHD 376


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 465 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 632
           Y+  GF MYL  ++GFG  +V     + V  F  ++     WW+  +   L+  ++
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 304
           ++ +  YV+PKR++      + TN YQ
Sbjct: 57  FETISDYVIPKRELCNKTITVCTNHYQ 83


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 506 WFWQNVGHHVYTQRCEY 556
           W WQN+G   YT+ C++
Sbjct: 75  WNWQNLGISRYTKDCDF 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 483 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 590
           N Y+   +GF     ++ +LSG  I   LN P  AW
Sbjct: 46  NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 121 NIRSPKNKY-SVVKRNNHCESNDLHP 195
           N  +P NK+ + V RN H ES   HP
Sbjct: 594 NSNTPFNKFPNSVSRNTHFESKSPHP 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,244
Number of Sequences: 5004
Number of extensions: 69010
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)