Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22g08
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 31 0.22
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 28 1.2
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 2.8
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 3.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.8
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 6.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.4
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.4
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 6.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 6.4
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 8.4
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 76 SSIKWFELQLTYFSTSKQQVCRFKKEIKLKSPNYVFWQCLEMI 204
S +++E T +T + + K+ IKL++ NYVFW L ++
Sbjct: 897 SYYRFYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVL 939
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 197 SRHCQKT*FGDFSFISFLKRQTCCFDVEKYVSCNSNHFMDDXXXXXXXXXXX*IFMLILI 18
S H KT SFI +++ Q C D+E Y+ NHF+ +F +I+
Sbjct: 345 SMHISKT-GPTHSFIIYIQMQLCFDDLESYL-IRRNHFLSFPLCKEQIQLHTDLFRMIIN 402
Query: 17 KLLHV 3
+++V
Sbjct: 403 GVMYV 407
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 309 ESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 425
ESL N TF + N I ++ P + H NS+++
Sbjct: 671 ESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEF 709
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 501 GFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK 680
G + I KTT + LP ++ + ASE+L L + T N + +C + E
Sbjct: 142 GIKAIFKTTVQFLPTRLAKIFEKKASEVLKDNL-LQTCNSKREGEVC-DVKEPAVASSES 199
Query: 681 SKKENDLNE 707
S ND+ E
Sbjct: 200 SDCFNDMQE 208
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 504 FRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKD-TCIDDEK 680
++K+L N +DD E E++V+ + ++DN S KD T I+ K
Sbjct: 420 YQKLLSGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTIEKYK 479
Query: 681 SK-KENDLNEQKCTNLKK 731
K E ++ LKK
Sbjct: 480 RKAAERKQRRKELRQLKK 497
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 327 AHSLVTHSLGQSKLQHQDEFSFLGSVRKT 241
AHSLV H++G KL + F+ ++ T
Sbjct: 30 AHSLVAHNIGHIKLDPNEGLFFVDNLVNT 58
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 402 HNGNSFDYKILLAECNDAGILLPSDLLC--IDSLIGFRKILKTT 527
H+G ++ + E + G L DL + LIGFRK L +T
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIGFRKYLNST 192
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 594 ELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNEQKCTN 722
E D T +++ N+C S SK+ SK D NE+K N
Sbjct: 86 ESDTQTRYLKQLINICNSPSKNHETSLSPSKSTIDNNERKLDN 128
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 414 SFDYKILLAECNDAGILLPSDLLCIDSLIG 503
SFD +L+ GIL+ +DLL I S G
Sbjct: 475 SFDRTLLILPGGSTGILIINDLLVIRSFAG 504
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 528 QKSLPLKMNTSKDDSASELL---WPELDVSTE-NWEEIDNLCASFSKDT 662
Q L +K +T KDD+ ELL E++V+ E N E++D L KDT
Sbjct: 228 QAKLGIKASTQKDDNDFELLNNTTGEIEVTKELNEEQLDAL-RKKDKDT 275
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 612 ENWEE---IDNLCASFSKDTCIDDEKSKKENDLNEQKCTNL 725
E WE+ ++ AS +K T D +K K+E+ ++ C+NL
Sbjct: 125 EEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNL 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,402
Number of Sequences: 5004
Number of extensions: 58297
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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