Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f19
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    34   0.027
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    33   0.035
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.1  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.0  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   4.0  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.0  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   5.4  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   7.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   9.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   9.4  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.4  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.4  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.4  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 30/123 (24%), Positives = 53/123 (43%)
 Frame = +1

Query: 49  SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 228
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 229 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
               +KS+ D +    +S  + T T   NP    +++    +  N L       +  + H
Sbjct: 82  NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140

Query: 409 TTT 417
           T T
Sbjct: 141 TPT 143


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
 Frame = +3

Query: 282 PAEAHRDSGEEPASGQRCCRSGES-PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 458
           P   H + GE           GE  PP P+             H +  +    P   +  
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333

Query: 459 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 560
           GE     P +H EL  H    H    E+   HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +1

Query: 115 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 273
           L K +TDL +Q E FN  C +  D +  +V   A       E V  E+    + DG+E  
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487

Query: 274 DSSQ 285
            SSQ
Sbjct: 488 SSSQ 491


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 217 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 396
           EDV  E+ +    +  E  D  + ++ E + +N  P+       +     + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307

Query: 397 QM 402
            +
Sbjct: 308 NL 309


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 441 DRSYRSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 560
           D S R   G  +IP+RHR+ R         + G  RE+P  H G
Sbjct: 2   DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 233 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 102
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 552 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 692
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +1

Query: 100 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 267
           P  K L K+  +L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +    +
Sbjct: 14  PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66

Query: 268 KFDSSQLKHTETQEK 312
           KF +S  +  +T EK
Sbjct: 67  KFHTSLNRFGKTLEK 81


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +1

Query: 184 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 363
           D  EK V  S +    E+ QK++ D  E+ D   +  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 364 LLDGVEHFDKT 396
            ++GV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 199 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 327
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 497
           ++HD G   S + DR     + K++   +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 429 ILFFRRRVLHLSLVEVFNSVQEVL 358
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 205 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 300
           LP +ED+   +   SL D   + D+SQL   E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 103
           P   +SA  F P+P+  Y D+ + A  V  P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 327
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 245 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 147
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,755
Number of Sequences: 5004
Number of extensions: 64061
Number of successful extensions: 248
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)