Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22f17
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 29 0.58
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 3.1
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 3.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 4.1
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 7.2
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 7.2
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 9.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 340 VYTGGSWSIWLATREGAWGWLADSFTHYFRMALV 441
+YT W ++L +E W ++ F HYF ALV
Sbjct: 453 IYTWWGW-LYLDLKERRWLYVYACFAHYFSFALV 485
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 371 WQLAKALGAGWQIHSRTILEWLSCIWGYQGG 463
W L KA GAG IH++T L + W G
Sbjct: 227 WALVKAHGAGDAIHAKTQLSTWNHGWAVTAG 257
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 216 ITERSFRLFNDTTKHWSETCFKYEK 290
+ E++FRLF++ H C +YE+
Sbjct: 280 VYEKTFRLFSEKISHNPTQCLRYER 304
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 244 MTRQNTGPRPVLNTKSKVFELDICRYIGKVCL 339
M ++N + + ++F+LDIC Y G + L
Sbjct: 857 MNKRNAISHTYMQIQEQLFQLDICEYSGDIFL 888
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 513 LLEKADSENNSASVNNETG-LNHIDPNIFKTSARHHKNATRH 635
LL+ + EN+ +S +NE G L D K S ++ T H
Sbjct: 939 LLDDEEEENDMSSTSNEAGNLKKYDQPNLKVSGKNDSFVTHH 980
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 69 MSLFPIRQCYSITRCTTFHAYIT 1
M L PI Y ++ CT FH Y+T
Sbjct: 159 MELLPIT--YDLSFCTVFHGYLT 179
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = -3
Query: 319 ICRYLIQKLCFSYLKQV----SDQCFVVSLKSLKDLSVMTTDTARSMY*LESNPPVKSHR 152
I ++L+ ++++ Q+ +D +SL+ +L ++T L PP + H
Sbjct: 334 IGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPGRLHT 393
Query: 151 QNTCSAKLAENRHLTHRSS*DLRVVQRNVFVPN*TVLLYHKVHDVPRLH 5
C +A H+T S R ++ F N ++HDV R +
Sbjct: 394 TYACPQAVATINHVTKIQSQYWRCMRPKHFDANPKDAHVDRLHDVIRTY 442
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 334 CLVYTGGSWSIWLATREGAWGWLADSF----THYFRMALVHLGL 453
C + +G WS+ + + E GW DS T+ +A+ +LG+
Sbjct: 164 CGIESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLAIKNLGI 207
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 213 VITERSFRLFNDTTKHWSETCFKYE 287
+ITE + ++ D K + E C KY+
Sbjct: 380 IITEATLKIVKDRRKKFLELCVKYD 404
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 222 ERSFRLFNDTT 254
ERSFRLFND+T
Sbjct: 449 ERSFRLFNDST 459
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 510 HLLEKADSENNSASVNNETGLNHIDPNIFKTSARHHKNATRHNVT 644
H+LE+A SENN ++NE +D HHK R +T
Sbjct: 1395 HVLERAMSENN--KMDNEAMDGFLDKLRNVKLESHHKPRNRSAIT 1437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,508
Number of Sequences: 5004
Number of extensions: 67403
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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