Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f17
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0209 + 15550558-15550746                                         28   7.6  
07_03_1388 - 26207091-26207104,26207315-26207653,26208429-26208495     28   7.6  
02_02_0399 - 9825365-9825912,9826019-9826190,9826325-9826442,982...    28   7.6  
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021...    28   10.0 

>12_02_0209 + 15550558-15550746
          Length = 62

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 358 WSIWLATREGAWGWL 402
           W  W+  R GAWGW+
Sbjct: 43  WRRWIRWRGGAWGWI 57


>07_03_1388 - 26207091-26207104,26207315-26207653,26208429-26208495
          Length = 139

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 95  LRSSGSTAECLCSQLDSATLSQGARRSTLT 6
           L SSG  AE +  Q+  AT  +G RRS  T
Sbjct: 26  LESSGGQAEAIGPQISPATEGEGKRRSLAT 55


>02_02_0399 -
           9825365-9825912,9826019-9826190,9826325-9826442,
           9826612-9826878,9826992-9827062,9827163-9827791,
           9827898-9828053,9828150-9828210
          Length = 673

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 515 QVWCSAHGIIGKLAKAACHPGSPRCTRAILK*C 417
           QVW ++H   G LA  + H G+PR   A+ K C
Sbjct: 152 QVWNASHKR-GGLAAGSAHGGAPRARVAVYKAC 183


>03_03_0029 -
           13900912-13901457,13901574-13901709,13901961-13902179,
           13902429-13902801,13903215-13903458
          Length = 505

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 43  ALSNWEQRHSAVLPEDLRNFY 105
           A+  W++   ++LPE LRNFY
Sbjct: 276 AVQRWDKSAVSILPEYLRNFY 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,765,772
Number of Sequences: 37544
Number of extensions: 439805
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)