Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22f15
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 1.2
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||... 28 1.2
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 28 1.6
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.1
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 3.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 6.4
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 8.5
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 8.5
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 8.5
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 198 NCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMK 377
N K VS+ +K+ K+ Y E + S + V K + L P + TK+G+ Q+I++
Sbjct: 646 NKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIE 705
Query: 378 S 380
+
Sbjct: 706 N 706
>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 126 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 245
++LEQ Q++ +D + LK + K V +H+D + Y
Sbjct: 11 HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +3
Query: 189 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQL 368
KY CK +S +Y + +S +P +AP+ + + P + L+ + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231
Query: 369 IMKSK 383
+ + K
Sbjct: 232 LAQGK 236
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 339 LITKSGVIQLIMKSKLPYAIELQEWLL 419
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 467 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 375
CG++L A L YFF L +G+RK+AL
Sbjct: 86 CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.8
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Frame = -3
Query: 583 LKSSSVFCA---TTACS-AFVCSVNVAISLVTNCLFFSSCCLIAGSYLPVHST*GITSSK 416
+++SS F A +T+C+ A V V + S T+C ++ ++ +T G S
Sbjct: 155 VEASSTFVADTTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSV 214
Query: 415 SHSCNSM-AYGSLLFIIN*ITPDLVISTVCGCKYSGSPCFATLFGAEGGSLAPDSLYVYL 239
+ + + G+++ + T T Y+GS T G P ++YV
Sbjct: 215 TTTLTGTPSNGTVIDTVEVPTTTNYGYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET 274
Query: 238 YFLSTCLLTASLQFPYFKLLAMSLATNLTCGFPCSSTYL 122
+ +T T ++ +P S+ T LT G P + T +
Sbjct: 275 PYPTTVTTTTTVGYP------GSVTTTLT-GAPSNGTVI 306
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 589 CFLKSSSVF-CATTACSAFVCSVNVAISLVTNC 494
CF + S +F C+T + AF+ + V S VTNC
Sbjct: 563 CFSEMSPLFACSTYSALAFIL-LQVISSYVTNC 594
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 EEVIPQVLCTGKYDPAIKQQEEKNKQL 500
+ V+ +++ GKY IK+Q +NKQL
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQL 577
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 207 DAVSRHVDKKYKYTYSESGARLPPS-APNSVAKQGDPLYLQPHTVLITKSG-VIQLIM 374
+ ++ + K Y+ + G P + +PN +A PL P L KSG V+++++
Sbjct: 58 ELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILL 115
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 450 GKYDPAIKQQEEKNKQLVTKLIATF 524
G+++ IKQQEE K L +K + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,467
Number of Sequences: 5004
Number of extensions: 57854
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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