Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22f15
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 33 0.18
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524... 29 2.9
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 29 5.1
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 6.7
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 6.7
07_03_0349 - 17051786-17052376 28 8.8
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604... 28 8.8
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/107 (21%), Positives = 45/107 (42%)
Frame = +3
Query: 414 LLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQE 593
LL++ I ++ A+ E + K + K + E L K E+ KK E
Sbjct: 1654 LLQDTIERIGENSTIKDALLLSERQEKDAIKKELVEAGERNEEL----IMKIEDTDKKIE 1709
Query: 594 FIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 734
++ I + IEAKD+ + + + + E ++ +E++ K
Sbjct: 1710 HLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLAEAQEKNEELLRK 1756
>06_01_0719 +
5239238-5239635,5239735-5239945,5240379-5240454,
5240573-5240675,5241089-5241157,5241318-5241354,
5241445-5241519,5241598-5241649,5241752-5241796,
5241994-5242080,5242348-5242445
Length = 416
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 168 KDIASSLKYGNCKDAVSRHVDKKY 239
K +A S+ GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -1
Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQRLYNFHILNCWRC 172
P C +P + IC F+P + ++ N + CW C
Sbjct: 408 PNCRQPNPKIVEDNFSHIICTFHPFAVIWQMGNNSHMFCWAC 449
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 459 DPAIKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEA 638
D + ++ K+ V +L E ++ VA+KT+EL + ++ I +Q+EA
Sbjct: 145 DDQVNHLDDALKECVRQLRQAREEQEEKIRDAVAKKTQELDSHKSELQNHIYELKQQLEA 204
Query: 639 KDLQVTRV 662
L+ V
Sbjct: 205 AKLEAATV 212
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 170 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 72
L KL+ LE H+P R+ + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362
>07_03_0349 - 17051786-17052376
Length = 196
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 297 PRCLEPRAVVSPPTRCTYICIFYPRVCLQR 208
P CL R +V PPTR Y R+ L R
Sbjct: 42 PACLRRRRLVLPPTRLAYYAAAVGRLRLHR 71
>06_01_0806 -
6048042-6048138,6048461-6048550,6049362-6049425,
6049504-6049552,6050403-6050459,6050953-6051024,
6051912-6052003,6052542-6052614,6052686-6052748,
6052837-6052901,6053803-6053890,6053974-6054015,
6054097-6054188,6054601-6054688,6055134-6055225,
6055368-6055419
Length = 391
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 204 KDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITK 350
+D HVDKK +T + G ++ + A+ P +QP V++ +
Sbjct: 258 RDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLR 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,912
Number of Sequences: 37544
Number of extensions: 397659
Number of successful extensions: 1250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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