Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f14
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z95559-14|CAJ76976.1|  338|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z95559-12|CAJ43917.1|  396|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical p...    29   3.7  
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    29   4.9  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    29   4.9  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      29   4.9  
Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical pr...    28   6.5  
X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein...    28   6.5  
M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein...    28   6.5  
M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein ( C.ele...    28   6.5  
M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein ( C.ele...    28   6.5  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    28   6.5  
D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein...    28   6.5  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   8.6  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   8.6  

>Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical
           protein T05E11.4 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -2

Query: 203 YHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASET 81
           YH   Q ++S DD   +++DD I+S   A +++QN I +++
Sbjct: 386 YHEDSQCSLSTDDDREAKDDDYIDS--DAEEKFQNMIDNDS 424


>Z95559-14|CAJ76976.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41E3.7c protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 396 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 295
           + Q T+ +Q Q   ++Q    V+ Q  T+P+GAE
Sbjct: 87  EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 120


>Z95559-12|CAJ43917.1|  396|Caenorhabditis elegans Hypothetical
           protein Y41E3.7b protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 396 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 295
           + Q T+ +Q Q   ++Q    V+ Q  T+P+GAE
Sbjct: 145 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 178


>Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical
           protein Y41E3.7a protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 396 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 295
           + Q T+ +Q Q   ++Q    V+ Q  T+P+GAE
Sbjct: 184 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 217


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 206 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 60
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 206 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 60
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 468 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 516


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 206 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 60
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>Z81589-7|CAB61028.1|   63|Caenorhabditis elegans Hypothetical
           protein T08G5.10 protein.
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>X53245-1|CAA37335.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>M92910-1|AAA28111.1|   63|Caenorhabditis elegans metallothionein-2
           protein.
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>M32387-1|AAA28118.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-2, complete cds.).
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>M32386-1|AAA28117.1|   63|Caenorhabditis elegans protein (
           C.elegans metallothionein-like protein (MT-Ce) mRNA,
           clone MTCe-1, complete cds.).
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 185 VNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 60
           +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 449 LNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 490


>D17365-1|BAA04181.1|   63|Caenorhabditis elegans metallothionein-II
           protein.
          Length = 63

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 317 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 448
           CDC N   C C   T  CDC     C+  C  TA  ++   S C  G
Sbjct: 5   CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 131 SVDRASQQYQNSIASETAAQRALQ 60
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 131 SVDRASQQYQNSIASETAAQRALQ 60
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,160
Number of Sequences: 27780
Number of extensions: 248515
Number of successful extensions: 783
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)