Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f09
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    28   0.078
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.55 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 0.078
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 233 LPFYMT---LARYSETSVLCAESSRCVATGGTAASRRGCMTLNTTRYTVR 373
           L +Y T   +A   +  V C  S  C A GG+A    GC T  +T    +
Sbjct: 310 LAYYSTTCDIATILDFWVRCVLSLHCAAVGGSANIMSGCSTSTSTNINTK 359


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 296 DYSPRTVLMFLNILLKSYKTVTPRWTRALRLDE 198
           DY+P     FL+I L S +T+T   +  L LD+
Sbjct: 156 DYNPSQKRQFLHITLASGRTLTVTPSHLLVLDD 188


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 498 TGSSRSVRVRCSAGPGPAAVASHVCRSGS 412
           T SSRSV   CS+ P  A+  S +   G+
Sbjct: 95  TYSSRSVMTSCSSVPTTASYGSDLYFPGA 123


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 266 LNILLKSYKTVTPRWTRALRLDELLILAS 180
           L +LL+ YKTVT   T  L+     +L S
Sbjct: 165 LEMLLQKYKTVTYVMTGQLKAQNSNLLKS 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,172
Number of Sequences: 336
Number of extensions: 3199
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)