Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f08
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   5.5  
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        23   5.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 67  TNSKLNILHVLTTM*LSF 120
           TN K+  LHV++ M LSF
Sbjct: 761 TNVKVECLHVISRMSLSF 778


>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 25  DNNDFMLDSFLSICTNSKLNIL 90
           DN DF+  SF+S   + +L IL
Sbjct: 38  DNYDFLFMSFISFIVSCRLFIL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,679
Number of Sequences: 5004
Number of extensions: 4204
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)