Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f08
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 88  LHVLTTM*LSFWKIKNS 138
           + ++TT  L  W++ NS
Sbjct: 5   IKIITTTGLENWRVNNS 21


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +1

Query: 43  LDSFLSICT 69
           +D+F+S+CT
Sbjct: 307 VDAFMSVCT 315


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 96  TNYHVIIILENK 131
           T YH+ I+ EN+
Sbjct: 946 TTYHLRIVAENE 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,266
Number of Sequences: 438
Number of extensions: 390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)