Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f07
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 341 PLKHDYKYTGVL-TVPDPAVPARMKVRFPLSVAGSA 445
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 341 PLKHDYKYTGVL-TVPDPAVPARMKVRFPLSVAGSA 445
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 207 C*VCGTLYRRPQQHPTASRT 266
           C +CG  Y RP    T  RT
Sbjct: 252 CRICGKSYARPSTLKTHLRT 271


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  SLASTVVLTHIS*NYVTRKYCNK 88
           S  +T+ +T      VTR YCNK
Sbjct: 79  SKGTTLFMTSQIKKNVTRAYCNK 101


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  SLASTVVLTHIS*NYVTRKYCNK 88
           S  +T+ +T      VTR YCNK
Sbjct: 79  SKGTTLFMTSQIKKNVTRAYCNK 101


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 702 SGFISMFTPSDAPSGRPGQSFCDM 631
           S  +++  P   PSG PG    D+
Sbjct: 221 SDVVNLSKPGTPPSGEPGNGPLDL 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,479
Number of Sequences: 336
Number of extensions: 4142
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)