Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f07
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   5.4  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    26   7.1  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   7.1  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   7.1  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 295 ISAGTGLSTFHTRIDALETRLQIYWCPDST*PRCSCKDEGSI-PSER 432
           +S+GT        I     R   Y  P ST P+C  +D+G   P++R
Sbjct: 654 VSSGTSTPRMAAPIARRSNRHHPYSRPSSTRPQCQLEDQGICDPNDR 700


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 539 LSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFS 712
           L R    +   VD +RLK  S+ +D  +    S+   PG  +  +    ID+  +  S
Sbjct: 350 LGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPGWEEKLAAAFKIDLKGDETS 407


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 605 GVDPYDLSIISQNDCPGLPDGASEG 679
           GV  YD + I   D PG+ +GAS+G
Sbjct: 102 GVLEYDGAEIQMLDLPGIIEGASQG 126


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 611 DPYDLSIISQNDCPGLPDGASEGVNIDINPETFSSHNIGEAVRKTGGAIA 760
           D   L+ +  N+C  L  G  +  N+  NP    + N  E + K+    A
Sbjct: 58  DNSSLNSVDNNECTNLDCGGKKHKNLSPNPSFHVNINAAEFIPKSHNGYA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,622
Number of Sequences: 5004
Number of extensions: 68667
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)