Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22f07
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-11|AAL27245.1| 327|Caenorhabditis elegans Hypothetical p... 31 0.72
U23172-10|AAM22066.1| 352|Caenorhabditis elegans Hypothetical p... 31 0.72
U23172-9|AAK67227.1| 362|Caenorhabditis elegans Hypothetical pr... 31 0.72
U23172-7|AAK67228.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 6.7
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 28 6.7
U28991-10|AAK68306.2| 487|Caenorhabditis elegans Hypothetical p... 28 6.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 6.7
AL021483-4|CAE46681.1| 139|Caenorhabditis elegans Hypothetical ... 28 6.7
Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U23172-11|AAL27245.1| 327|Caenorhabditis elegans Hypothetical
protein F25B5.3c protein.
Length = 327
Score = 31.5 bits (68), Expect = 0.72
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +2
Query: 392 AVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTCQ---KLAFAHRRSATILSRTK-EL 559
A P + + V G A TV+ +D+ + F + +L+ H + R K EL
Sbjct: 45 ADPTAVAAKLRKMVVGGAGKTVVISDFDYTLSRFANEQGERLSTTHGVFDDNVMRLKPEL 104
Query: 560 DKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFSSHNIGEAVR 739
+ FVD LK Y ++ + ++ + P + ++ +N E FS + I + VR
Sbjct: 105 GQKFVD---LKNKYYPIE-FSPNLTMEEKIPHMEKWWGTSHSLIVN-EKFSKNTIEDFVR 159
Query: 740 KTGGAIADGVEYVVEA 787
++ DG E +EA
Sbjct: 160 QSRIVFKDGAEDFIEA 175
>U23172-10|AAM22066.1| 352|Caenorhabditis elegans Hypothetical
protein F25B5.3d protein.
Length = 352
Score = 31.5 bits (68), Expect = 0.72
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +2
Query: 392 AVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTCQ---KLAFAHRRSATILSRTK-EL 559
A P + + V G A TV+ +D+ + F + +L+ H + R K EL
Sbjct: 70 ADPTAVAAKLRKMVVGGAGKTVVISDFDYTLSRFANEQGERLSTTHGVFDDNVMRLKPEL 129
Query: 560 DKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFSSHNIGEAVR 739
+ FVD LK Y ++ + ++ + P + ++ +N E FS + I + VR
Sbjct: 130 GQKFVD---LKNKYYPIE-FSPNLTMEEKIPHMEKWWGTSHSLIVN-EKFSKNTIEDFVR 184
Query: 740 KTGGAIADGVEYVVEA 787
++ DG E +EA
Sbjct: 185 QSRIVFKDGAEDFIEA 200
>U23172-9|AAK67227.1| 362|Caenorhabditis elegans Hypothetical
protein F25B5.3a protein.
Length = 362
Score = 31.5 bits (68), Expect = 0.72
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +2
Query: 392 AVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTCQ---KLAFAHRRSATILSRTK-EL 559
A P + + V G A TV+ +D+ + F + +L+ H + R K EL
Sbjct: 80 ADPTAVAAKLRKMVVGGAGKTVVISDFDYTLSRFANEQGERLSTTHGVFDDNVMRLKPEL 139
Query: 560 DKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFSSHNIGEAVR 739
+ FVD LK Y ++ + ++ + P + ++ +N E FS + I + VR
Sbjct: 140 GQKFVD---LKNKYYPIE-FSPNLTMEEKIPHMEKWWGTSHSLIVN-EKFSKNTIEDFVR 194
Query: 740 KTGGAIADGVEYVVEA 787
++ DG E +EA
Sbjct: 195 QSRIVFKDGAEDFIEA 210
>U23172-7|AAK67228.1| 376|Caenorhabditis elegans Hypothetical
protein F25B5.3b protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.72
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Frame = +2
Query: 392 AVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTCQ---KLAFAHRRSATILSRTK-EL 559
A P + + V G A TV+ +D+ + F + +L+ H + R K EL
Sbjct: 94 ADPTAVAAKLRKMVVGGAGKTVVISDFDYTLSRFANEQGERLSTTHGVFDDNVMRLKPEL 153
Query: 560 DKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGLPDGASEGVNIDINPETFSSHNIGEAVR 739
+ FVD LK Y ++ + ++ + P + ++ +N E FS + I + VR
Sbjct: 154 GQKFVD---LKNKYYPIE-FSPNLTMEEKIPHMEKWWGTSHSLIVN-EKFSKNTIEDFVR 208
Query: 740 KTGGAIADGVEYVVEA 787
++ DG E +EA
Sbjct: 209 QSRIVFKDGAEDFIEA 224
>Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical
protein Y70C5C.6a protein.
Length = 342
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 424 RESNLHPCRNSGVRYCQDTSI 362
R+SN HPCR+ +R C + +
Sbjct: 44 RQSNAHPCRSCRIRKCYEAGM 64
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 400 CKDEGSIPSERCRLSKLHSFGNGLHNIRRGLHLSE--VSVRS*TICH 534
CK G ERCRL + G GL N+ L ++ + R TI H
Sbjct: 1318 CKYHGEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAH 1364
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 400 CKDEGSIPSERCRLSKLHSFGNGLHNIRRGLHLSE--VSVRS*TICH 534
CK G ERCRL + G GL N+ L ++ + R TI H
Sbjct: 1318 CKYHGEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAH 1364
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 CHPAIARVDSRVNAYFLKLRNSQIL*QN-VEVDGIRSVFDC 126
C P RV R++ +FLK SQIL N V DG + C
Sbjct: 36 CIPKSCRVPIRLHVFFLKAGTSQILQSNDVVEDGTVAQMAC 76
>U28991-10|AAK68306.2| 487|Caenorhabditis elegans Hypothetical
protein F08F8.10a protein.
Length = 487
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 227 IQKTSTASHCITYNFSRTDEPGQYQLEQDSQHFILGLTPLKHDYKYTGVLTVPDPAVPAR 406
+QK T + D+ G+ Q + + LT +H Y+Y G + D AR
Sbjct: 110 LQKVKRKKGATTEESTDIDQGGEEQYYDEDEEIEFNLTGEQHKYQYLGYDRMNDN--KAR 167
Query: 407 MKVRFPLSVAGSASYTVLATD-YTTY 481
K +S G T+ ++ Y TY
Sbjct: 168 KKAAKLISYPGYTGSTLNTSNVYQTY 193
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 400 CKDEGSIPSERCRLSKLHSFGNGLHNIRRGLHLSE--VSVRS*TICH 534
CK G ERCRL + G GL N+ L ++ + R TI H
Sbjct: 1318 CKYHGEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAH 1364
>AL021483-4|CAE46681.1| 139|Caenorhabditis elegans Hypothetical
protein Y38H8A.7 protein.
Length = 139
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 793 LSSLHNVFHAVSNSSASFPDS-FADVVRRE 707
+S LHN+ H V+ FP + F DV R+
Sbjct: 89 ISVLHNILHVVAGFEGQFPSADFGDVFSRQ 118
>Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical
protein ZC434.3 protein.
Length = 474
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 353 DYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDY 472
DY + G P P P+ + VRFP+S A + L Y
Sbjct: 192 DYLFDGGFDFPIPLAPSGVGVRFPMSGAVNVGTDPLLITY 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,205,917
Number of Sequences: 27780
Number of extensions: 393357
Number of successful extensions: 1120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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