Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22f06
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    63   3e-11
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    36   0.006
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   1.5  
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    26   3.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   6.2  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   8.3  

>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
 Frame = +3

Query: 9   KNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVI 188
           KNG+G +    +RI F +C   G+S+GM++F+   L   +K++  V  ++  R+ + P+I
Sbjct: 13  KNGLGSFTRPCRRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLI 72

Query: 189 VGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQY-TNHPSVQGPWTPF 365
              Y  G    +     +   I +   L R   G     RL KY   + +PSV+G W+PF
Sbjct: 73  RAYYNTGREKVICTRKMSASSIFQKAILCRDSDG--LKPRLIKYPVESTNPSVRGIWSPF 130

Query: 366 T 368
           +
Sbjct: 131 S 131


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 415 NLTSGSSAVFNSGSLNVNGVQGPWTEGWFVYWYLRSLEFQLLPC*VR 275
           ++T   S  +        G+  PWT+ W   W+L SL++    C ++
Sbjct: 425 SITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIK 471


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 287 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFPNYD 183
           +L  ++ +  YD+  GFV    P+  P ++FP+ D
Sbjct: 55  VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 303 SRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELP 404
           SRL+K ++ N P+ +G +T +T  +    + E P
Sbjct: 744 SRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDP 777


>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 269 IVPNSTRQQLELETPQVPVHEPP 337
           IVP+ T  QL L +  +P+ +PP
Sbjct: 27  IVPSETMDQLPLVSATIPIMKPP 49


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 183 PAHDVYVALNTPPLQGCLLR 124
           P  D+ + +N P LQGCL R
Sbjct: 287 PLMDISLDINEPTLQGCLER 306


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 338 GVVRVLVLAESRVPVVALLSSEQFDP 261
           GV  ++ L  S+VP+  ++SS+  DP
Sbjct: 37  GVTLLIFLVMSQVPLYGIVSSDSSDP 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,243
Number of Sequences: 5004
Number of extensions: 54067
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)